Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USP43Q70EL4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
USP43Q70EL4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.11■□□□□ 0.49
USP43Q70EL4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP43Q70EL4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
USP43Q70EL4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
USP43Q70EL4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.1■□□□□ 0.49
USP43Q70EL4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 AC120498.9-201ENST00000339021 3867 ntBASIC18.1■□□□□ 0.49
USP43Q70EL4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
USP43Q70EL4 MIR572-201ENST00000384983 95 ntBASIC18.1■□□□□ 0.49
USP43Q70EL4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USP43Q70EL4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.1■□□□□ 0.49
USP43Q70EL4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.1■□□□□ 0.49
USP43Q70EL4 AC005332.8-201ENST00000622750 2735 ntBASIC18.1■□□□□ 0.49
USP43Q70EL4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.1■□□□□ 0.49
USP43Q70EL4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.1■□□□□ 0.49
USP43Q70EL4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP43Q70EL4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.09■□□□□ 0.49
USP43Q70EL4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 TMEM179-206ENST00000616017 1645 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
USP43Q70EL4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
USP43Q70EL4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.09■□□□□ 0.49
USP43Q70EL4 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 OR2I1P-207ENST00000453522 948 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L2-201ENST00000561772 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.09■□□□□ 0.49
USP43Q70EL4 IKBKGP1-201ENST00000612193 1073 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L6-201ENST00000626483 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L1-201ENST00000627662 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L8-201ENST00000629013 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L3-201ENST00000630187 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L7-201ENST00000630678 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 DUX4L5-201ENST00000630834 1275 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 Z82202.1-201ENST00000623446 1880 ntBASIC18.09■□□□□ 0.49
USP43Q70EL4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP43Q70EL4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.09■□□□□ 0.49
USP43Q70EL4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP43Q70EL4 BX005040.4-201ENST00000637145 1518 ntBASIC18.08■□□□□ 0.49
USP43Q70EL4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
USP43Q70EL4 FZD10-202ENST00000539839 3282 ntBASIC18.08■□□□□ 0.49
USP43Q70EL4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms