Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AL031133.1-201ENST00000406807 723 ntBASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AL138966.2-201ENST00000621997 464 ntBASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 DUSP5P1-201ENST00000441325 1139 ntBASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 KRT126P-201ENST00000549467 1181 ntBASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 AC005229.4-201ENST00000610085 2198 ntBASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13DQ5THJ4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13DQ5THJ4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 AC004980.1-204ENST00000429707 299 ntBASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 AC139887.4-201ENST00000607877 719 ntBASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13DQ5THJ4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13DQ5THJ4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13DQ5THJ4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13DQ5THJ4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13DQ5THJ4 AC011506.1-201ENST00000474329 610 ntBASIC13.5□□□□□ -0.25
VPS13DQ5THJ4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms