Protein–RNA interactions for Protein: P48743

RFX1, RFX-like DNA-binding protein RFX1, yeastyeast

Predictions only

Length 811 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RFX1P48743 HKR1YDR420W 5409 nt1.38□□□□□ -2.19
RFX1P48743 GEA2YEL022W 4380 nt1.38□□□□□ -2.19
RFX1P48743 SEC3YER008C 4011 nt1.38□□□□□ -2.19
RFX1P48743 YBL039C-AYBL039C-A 84 nt1.38□□□□□ -2.19
RFX1P48743 snR190snR190 190 nt1.37□□□□□ -2.19
RFX1P48743 YCL001W-BYCL001W-B 255 nt1.37□□□□□ -2.19
RFX1P48743 TAH1YCR060W 336 nt1.36□□□□□ -2.19
RFX1P48743 SEC21YNL287W 2808 nt1.35□□□□□ -2.19
RFX1P48743 YLR041WYLR041W 321 nt1.35□□□□□ -2.19
RFX1P48743 FYV10YIL097W 1551 nt1.34□□□□□ -2.19
RFX1P48743 MSN5YDR335W 3675 nt1.34□□□□□ -2.2
RFX1P48743 tH(GUG)E1tH(GUG)E1 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)E2tH(GUG)E2 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)G1tH(GUG)G1 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)G2tH(GUG)G2 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)HtH(GUG)H 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)KtH(GUG)K 72 nt1.33□□□□□ -2.2
RFX1P48743 tH(GUG)MtH(GUG)M 72 nt1.33□□□□□ -2.2
RFX1P48743 STB6YKL072W 2301 nt1.33□□□□□ -2.2
RFX1P48743 NUP157YER105C 4176 nt1.33□□□□□ -2.2
RFX1P48743 ASE1YOR058C 2658 nt1.33□□□□□ -2.2
RFX1P48743 YOR329W-AYOR329W-A 210 nt1.31□□□□□ -2.2
RFX1P48743 YLR232WYLR232W 348 nt1.3□□□□□ -2.2
RFX1P48743 SEC8YPR055W 3198 nt1.29□□□□□ -2.2
RFX1P48743 YNL067W-BYNL067W-B 141 nt1.29□□□□□ -2.2
RFX1P48743 YCR095W-AYCR095W-A 159 nt1.28□□□□□ -2.2
RFX1P48743 QCR9YGR183C 201 nt1.28□□□□□ -2.2
RFX1P48743 CDC39YCR093W 6327 nt1.28□□□□□ -2.2
RFX1P48743 OST4YDL232W 111 nt1.27□□□□□ -2.21
RFX1P48743 RAD9YDR217C 3930 nt1.25□□□□□ -2.21
RFX1P48743 tM(CAU)Q2tM(CAU)Q2 78 nt1.25□□□□□ -2.21
RFX1P48743 KAP120YPL125W 3099 nt1.25□□□□□ -2.21
RFX1P48743 YJR029WYJR029W 5268 nt1.25□□□□□ -2.21
RFX1P48743 YPR137C-BYPR137C-B 5268 nt1.25□□□□□ -2.21
RFX1P48743 YGR130CYGR130C 2451 nt1.24□□□□□ -2.21
RFX1P48743 YLR399W-AYLR399W-A 105 nt1.24□□□□□ -2.21
RFX1P48743 YBR099CYBR099C 384 nt1.24□□□□□ -2.21
RFX1P48743 IML1YJR138W 4755 nt1.24□□□□□ -2.21
RFX1P48743 SOM1YEL059C-A 225 nt1.23□□□□□ -2.21
RFX1P48743 PRP16YKR086W 3216 nt1.23□□□□□ -2.21
RFX1P48743 YHR131W-AYHR131W-A 246 nt1.22□□□□□ -2.21
RFX1P48743 RPM2YML091C 3609 nt1.22□□□□□ -2.21
RFX1P48743 YDR544CYDR544C 429 nt1.21□□□□□ -2.22
RFX1P48743 snR39BsnR39B 96 nt1.21□□□□□ -2.22
RFX1P48743 YPR160W-AYPR160W-A 81 nt1.2□□□□□ -2.22
RFX1P48743 YIL071W-AYIL071W-A 477 nt1.19□□□□□ -2.22
RFX1P48743 SIP4YJL089W 2490 nt1.18□□□□□ -2.22
RFX1P48743 BEM3YPL115C 3387 nt1.18□□□□□ -2.22
RFX1P48743 tV(UAC)BtV(UAC)B 74 nt1.17□□□□□ -2.22
RFX1P48743 tV(UAC)DtV(UAC)D 74 nt1.17□□□□□ -2.22
RFX1P48743 tN(GUU)QtN(GUU)Q 71 nt1.16□□□□□ -2.22
RFX1P48743 COG6YNL041C 2520 nt1.15□□□□□ -2.23
RFX1P48743 YSP1YHR155W 3687 nt1.15□□□□□ -2.23
RFX1P48743 STF2YGR008C 255 nt1.14□□□□□ -2.23
RFX1P48743 SPT7YBR081C 3999 nt1.14□□□□□ -2.23
RFX1P48743 YDL073WYDL073W 2955 nt1.13□□□□□ -2.23
RFX1P48743 YDR210WYDR210W 228 nt1.13□□□□□ -2.23
RFX1P48743 PMP2YEL017C-A 132 nt1.13□□□□□ -2.23
RFX1P48743 YJL127W-AYJL127W-A 117 nt1.13□□□□□ -2.23
RFX1P48743 UBP3YER151C 2739 nt1.12□□□□□ -2.23
RFX1P48743 YGR146C-AYGR146C-A 162 nt1.11□□□□□ -2.23
RFX1P48743 NST1YNL091W 3723 nt1.11□□□□□ -2.23
RFX1P48743 VAM6YDL077C 3150 nt1.1□□□□□ -2.23
RFX1P48743 BUD3YCL014W 4911 nt1.1□□□□□ -2.23
RFX1P48743 BEM2YER155C 6504 nt1.08□□□□□ -2.24
RFX1P48743 SCC2YDR180W 4482 nt1.07□□□□□ -2.24
RFX1P48743 SEC1YDR164C 2175 nt1.07□□□□□ -2.24
RFX1P48743 YNL103W-AYNL103W-A 90 nt1.07□□□□□ -2.24
RFX1P48743 TFB5YDR079C-A 219 nt1.06□□□□□ -2.24
RFX1P48743 ULP2YIL031W 3105 nt1.05□□□□□ -2.24
RFX1P48743 YDR524C-AYDR524C-A 120 nt1.05□□□□□ -2.24
RFX1P48743 YBR072C-AYBR072C-A 162 nt1.05□□□□□ -2.24
RFX1P48743 GLG1YKR058W 1851 nt1.05□□□□□ -2.24
RFX1P48743 snR61snR61 90 nt1.04□□□□□ -2.24
RFX1P48743 YPR117WYPR117W 7470 nt1.04□□□□□ -2.24
RFX1P48743 DOP1YDR141C 5097 nt1.02□□□□□ -2.25
RFX1P48743 BIR1YJR089W 2865 nt1.02□□□□□ -2.25
RFX1P48743 YMR326CYMR326C 309 nt1.02□□□□□ -2.25
RFX1P48743 YBR178WYBR178W 375 nt0.99□□□□□ -2.25
RFX1P48743 EMT1tM(CAU)D 73 nt0.98□□□□□ -2.25
RFX1P48743 EMT5tM(CAU)J1 73 nt0.98□□□□□ -2.25
RFX1P48743 EMT3tM(CAU)J2 73 nt0.98□□□□□ -2.25
RFX1P48743 EMT4tM(CAU)M 73 nt0.98□□□□□ -2.25
RFX1P48743 EMT2tM(CAU)O2 73 nt0.98□□□□□ -2.25
RFX1P48743 YBL109WYBL109W 336 nt0.98□□□□□ -2.25
RFX1P48743 YNL266WYNL266W 420 nt0.97□□□□□ -2.25
RFX1P48743 YLL006W-AYLL006W-A 177 nt0.96□□□□□ -2.26
RFX1P48743 RCO1YMR075W 2055 nt0.95□□□□□ -2.26
RFX1P48743 NNF2YGR089W 2811 nt0.94□□□□□ -2.26
RFX1P48743 RKR1YMR247C 4689 nt0.93□□□□□ -2.26
RFX1P48743 HUG1YML058W-A 207 nt0.92□□□□□ -2.26
RFX1P48743 PAU24YBR301W 363 nt0.92□□□□□ -2.26
RFX1P48743 YGL041C-BYGL041C-B 183 nt0.91□□□□□ -2.26
RFX1P48743 YHR217CYHR217C 462 nt0.91□□□□□ -2.26
RFX1P48743 SBH1YER087C-B 249 nt0.9□□□□□ -2.27
RFX1P48743 LTE1YAL024C 4308 nt0.89□□□□□ -2.27
RFX1P48743 CSE1YGL238W 2883 nt0.89□□□□□ -2.27
RFX1P48743 SEC10YLR166C 2616 nt0.86□□□□□ -2.27
RFX1P48743 YBR196C-AYBR196C-A 150 nt0.84□□□□□ -2.27
RFX1P48743 NIP1YMR309C 2439 nt0.84□□□□□ -2.28
Retrieved 100 of 7,029 protein–RNA pairs in 10.4 ms