Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YOR093CYOR093C 4947 nt1.93□□□□□ -2.1
MSH4P40965 CHS1YNL192W 3396 nt1.93□□□□□ -2.1
MSH4P40965 KAP120YPL125W 3099 nt1.93□□□□□ -2.1
MSH4P40965 YDR210WYDR210W 228 nt1.92□□□□□ -2.1
MSH4P40965 VPS15YBR097W 4365 nt1.91□□□□□ -2.1
MSH4P40965 YJL127W-AYJL127W-A 117 nt1.91□□□□□ -2.1
MSH4P40965 YLR041WYLR041W 321 nt1.91□□□□□ -2.1
MSH4P40965 YLR232WYLR232W 348 nt1.91□□□□□ -2.1
MSH4P40965 YLR419WYLR419W 4308 nt1.9□□□□□ -2.1
MSH4P40965 BIR1YJR089W 2865 nt1.9□□□□□ -2.1
MSH4P40965 SLX4YLR135W 2247 nt1.9□□□□□ -2.11
MSH4P40965 FYV10YIL097W 1551 nt1.89□□□□□ -2.11
MSH4P40965 BPH1YCR032W 6504 nt1.89□□□□□ -2.11
MSH4P40965 snR62snR62 100 nt1.89□□□□□ -2.11
MSH4P40965 YNL266WYNL266W 420 nt1.89□□□□□ -2.11
MSH4P40965 YBR072C-AYBR072C-A 162 nt1.89□□□□□ -2.11
MSH4P40965 BST1YFL025C 3090 nt1.89□□□□□ -2.11
MSH4P40965 snR14snR14 160 nt1.87□□□□□ -2.11
MSH4P40965 YLR422WYLR422W 5799 nt1.86□□□□□ -2.11
MSH4P40965 SEC1YDR164C 2175 nt1.86□□□□□ -2.11
MSH4P40965 SMC4YLR086W 4257 nt1.86□□□□□ -2.11
MSH4P40965 NOP9YJL010C 2001 nt1.86□□□□□ -2.11
MSH4P40965 FIG2YCR089W 4830 nt1.86□□□□□ -2.11
MSH4P40965 YGR146C-AYGR146C-A 162 nt1.85□□□□□ -2.11
MSH4P40965 snR190snR190 190 nt1.83□□□□□ -2.12
MSH4P40965 CCH1YGR217W 6120 nt1.83□□□□□ -2.12
MSH4P40965 TRM732YMR259C 4263 nt1.82□□□□□ -2.12
MSH4P40965 CLU1YMR012W 3834 nt1.81□□□□□ -2.12
MSH4P40965 YOL083C-AYOL083C-A 141 nt1.81□□□□□ -2.12
MSH4P40965 STO1YMR125W 2586 nt1.8□□□□□ -2.12
MSH4P40965 RPL26BYGR034W 384 nt1.8□□□□□ -2.12
MSH4P40965 EST2YLR318W 2655 nt1.79□□□□□ -2.12
MSH4P40965 SWI4YER111C 3282 nt1.78□□□□□ -2.12
MSH4P40965 SET3YKR029C 2256 nt1.78□□□□□ -2.12
MSH4P40965 LAA1YJL207C 6045 nt1.78□□□□□ -2.12
MSH4P40965 WAR1YML076C 2835 nt1.78□□□□□ -2.12
MSH4P40965 MSN5YDR335W 3675 nt1.77□□□□□ -2.13
MSH4P40965 IRA1YBR140C 9279 nt1.77□□□□□ -2.13
MSH4P40965 RAD9YDR217C 3930 nt1.77□□□□□ -2.13
MSH4P40965 PET127YOR017W 2403 nt1.75□□□□□ -2.13
MSH4P40965 YBL071C-BYBL071C-B 99 nt1.75□□□□□ -2.13
MSH4P40965 ROM2YLR371W 4071 nt1.75□□□□□ -2.13
MSH4P40965 SXM1YDR395W 2835 nt1.75□□□□□ -2.13
MSH4P40965 RPM2YML091C 3609 nt1.74□□□□□ -2.13
MSH4P40965 GEA2YEL022W 4380 nt1.74□□□□□ -2.13
MSH4P40965 FYV8YGR196C 2454 nt1.74□□□□□ -2.13
MSH4P40965 ASE1YOR058C 2658 nt1.73□□□□□ -2.13
MSH4P40965 APL3YBL037W 3078 nt1.72□□□□□ -2.13
MSH4P40965 AZF1YOR113W 2745 nt1.72□□□□□ -2.13
MSH4P40965 SPC110YDR356W 2835 nt1.72□□□□□ -2.13
MSH4P40965 YGR130CYGR130C 2451 nt1.71□□□□□ -2.14
MSH4P40965 NUP145YGL092W 3954 nt1.71□□□□□ -2.14
MSH4P40965 PMD1YER132C 5262 nt1.7□□□□□ -2.14
MSH4P40965 YBR196C-AYBR196C-A 150 nt1.7□□□□□ -2.14
MSH4P40965 YDR034C-AYDR034C-A 177 nt1.69□□□□□ -2.14
MSH4P40965 tQ(UUG)E2tQ(UUG)E2 72 nt1.69□□□□□ -2.14
MSH4P40965 HUG1YML058W-A 207 nt1.69□□□□□ -2.14
MSH4P40965 NUP188YML103C 4968 nt1.67□□□□□ -2.14
MSH4P40965 SSK2YNR031C 4740 nt1.67□□□□□ -2.14
MSH4P40965 RPS26AYGL189C 360 nt1.67□□□□□ -2.14
MSH4P40965 YBL100W-CYBL100W-C 120 nt1.67□□□□□ -2.14
MSH4P40965 IML1YJR138W 4755 nt1.67□□□□□ -2.14
MSH4P40965 CDC25YLR310C 4770 nt1.66□□□□□ -2.14
MSH4P40965 YBR200W-AYBR200W-A 165 nt1.66□□□□□ -2.14
MSH4P40965 YDL073WYDL073W 2955 nt1.66□□□□□ -2.14
MSH4P40965 SEC3YER008C 4011 nt1.66□□□□□ -2.14
MSH4P40965 BEM3YPL115C 3387 nt1.65□□□□□ -2.14
MSH4P40965 PIK1YNL267W 3201 nt1.65□□□□□ -2.15
MSH4P40965 SEC8YPR055W 3198 nt1.64□□□□□ -2.15
MSH4P40965 YOL164W-AYOL164W-A 183 nt1.64□□□□□ -2.15
MSH4P40965 PRP16YKR086W 3216 nt1.63□□□□□ -2.15
MSH4P40965 SEC10YLR166C 2616 nt1.63□□□□□ -2.15
MSH4P40965 HKR1YDR420W 5409 nt1.63□□□□□ -2.15
MSH4P40965 YGR240C-AYGR240C-A 201 nt1.61□□□□□ -2.15
MSH4P40965 UBP3YER151C 2739 nt1.61□□□□□ -2.15
MSH4P40965 CDC39YCR093W 6327 nt1.59□□□□□ -2.15
MSH4P40965 NNF2YGR089W 2811 nt1.59□□□□□ -2.15
MSH4P40965 tN(GUU)QtN(GUU)Q 71 nt1.59□□□□□ -2.15
MSH4P40965 YLR399W-AYLR399W-A 105 nt1.59□□□□□ -2.15
MSH4P40965 tH(GUG)E1tH(GUG)E1 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)E2tH(GUG)E2 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)G1tH(GUG)G1 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)G2tH(GUG)G2 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)HtH(GUG)H 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)KtH(GUG)K 72 nt1.57□□□□□ -2.16
MSH4P40965 tH(GUG)MtH(GUG)M 72 nt1.57□□□□□ -2.16
MSH4P40965 YLR286W-AYLR286W-A 135 nt1.55□□□□□ -2.16
MSH4P40965 YPR160W-AYPR160W-A 81 nt1.55□□□□□ -2.16
MSH4P40965 YSP1YHR155W 3687 nt1.55□□□□□ -2.16
MSH4P40965 GLG1YKR058W 1851 nt1.53□□□□□ -2.16
MSH4P40965 snR47snR47 99 nt1.52□□□□□ -2.17
MSH4P40965 ULP2YIL031W 3105 nt1.5□□□□□ -2.17
MSH4P40965 tD(GUC)QtD(GUC)Q 75 nt1.48□□□□□ -2.17
MSH4P40965 tV(UAC)BtV(UAC)B 74 nt1.47□□□□□ -2.17
MSH4P40965 tV(UAC)DtV(UAC)D 74 nt1.47□□□□□ -2.17
MSH4P40965 ORC3YLL004W 1851 nt1.46□□□□□ -2.18
MSH4P40965 snR53snR53 91 nt1.45□□□□□ -2.18
MSH4P40965 EST1YLR233C 2100 nt1.42□□□□□ -2.18
MSH4P40965 YNL284C-BYNL284C-B 5268 nt1.42□□□□□ -2.18
MSH4P40965 SIP4YJL089W 2490 nt1.42□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 23.2 ms