Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN4AP35499 DAP-202ENST00000432074 1048 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN4AP35499 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN4AP35499 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC23.84■■□□□ 1.41
SCN4AP35499 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN4AP35499 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN4AP35499 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN4AP35499 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SCN4AP35499 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SCN4AP35499 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.84■■□□□ 1.41
SCN4AP35499 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN4AP35499 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN4AP35499 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.84■■□□□ 1.41
SCN4AP35499 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC23.84■■□□□ 1.41
SCN4AP35499 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 RCC2P6-201ENST00000526625 1557 ntBASIC23.83■■□□□ 1.41
SCN4AP35499 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SCN4AP35499 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.83■■□□□ 1.41
SCN4AP35499 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC23.83■■□□□ 1.41
SCN4AP35499 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SCN4AP35499 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.83■■□□□ 1.41
SCN4AP35499 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC23.83■■□□□ 1.41
SCN4AP35499 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.83■■□□□ 1.4
SCN4AP35499 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SCN4AP35499 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SCN4AP35499 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.83■■□□□ 1.4
SCN4AP35499 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.82■■□□□ 1.4
SCN4AP35499 NDUFV2-AS1-203ENST00000608008 779 ntBASIC23.82■■□□□ 1.4
SCN4AP35499 AC130371.2-201ENST00000619443 611 ntBASIC23.82■■□□□ 1.4
SCN4AP35499 AC116562.4-202ENST00000641738 218 ntBASIC23.82■■□□□ 1.4
SCN4AP35499 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SCN4AP35499 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.82■■□□□ 1.4
SCN4AP35499 AC131212.4-201ENST00000623606 975 ntBASIC23.82■■□□□ 1.4
SCN4AP35499 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN4AP35499 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SCN4AP35499 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.81■■□□□ 1.4
SCN4AP35499 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 MFAP1P1-201ENST00000442257 1255 ntBASIC23.81■■□□□ 1.4
SCN4AP35499 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC23.81■■□□□ 1.4
SCN4AP35499 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.81■■□□□ 1.4
SCN4AP35499 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN4AP35499 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.81■■□□□ 1.4
SCN4AP35499 AC012313.10-201ENST00000623509 926 ntBASIC23.81■■□□□ 1.4
SCN4AP35499 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SCN4AP35499 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.8■■□□□ 1.4
SCN4AP35499 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SCN4AP35499 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.8■■□□□ 1.4
SCN4AP35499 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.8■■□□□ 1.4
SCN4AP35499 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 AP000692.2-201ENST00000608391 879 ntBASIC23.8■■□□□ 1.4
SCN4AP35499 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 AL691432.3-201ENST00000621860 400 ntBASIC23.8■■□□□ 1.4
SCN4AP35499 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.8■■□□□ 1.4
SCN4AP35499 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC23.8■■□□□ 1.4
SCN4AP35499 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SCN4AP35499 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC23.8■■□□□ 1.4
SCN4AP35499 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN4AP35499 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.8■■□□□ 1.4
SCN4AP35499 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SCN4AP35499 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN4AP35499 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SCN4AP35499 AC011484.1-201ENST00000377652 1995 ntBASIC23.79■■□□□ 1.4
SCN4AP35499 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
SCN4AP35499 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN4AP35499 HOMER2P1-201ENST00000455653 964 ntBASIC23.79■■□□□ 1.4
SCN4AP35499 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SCN4AP35499 AC011558.1-201ENST00000623459 338 ntBASIC23.79■■□□□ 1.4
SCN4AP35499 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.79■■□□□ 1.4
SCN4AP35499 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN4AP35499 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms