Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGB1P09429 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGB1P09429 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGB1P09429 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
HMGB1P09429 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
HMGB1P09429 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
HMGB1P09429 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC23.59■■□□□ 1.37
HMGB1P09429 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
HMGB1P09429 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
HMGB1P09429 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
HMGB1P09429 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.59■■□□□ 1.37
HMGB1P09429 AC091874.3-201ENST00000512672 1195 ntBASIC23.59■■□□□ 1.37
HMGB1P09429 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGB1P09429 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGB1P09429 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.59■■□□□ 1.37
HMGB1P09429 CRK-204ENST00000574295 1391 ntTSL 5 BASIC23.59■■□□□ 1.37
HMGB1P09429 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.59■■□□□ 1.37
HMGB1P09429 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGB1P09429 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.58■■□□□ 1.37
HMGB1P09429 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
HMGB1P09429 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.58■■□□□ 1.37
HMGB1P09429 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGB1P09429 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
HMGB1P09429 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
HMGB1P09429 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
HMGB1P09429 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.58■■□□□ 1.36
HMGB1P09429 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 AC009237.14-201ENST00000609975 1594 ntBASIC23.57■■□□□ 1.36
HMGB1P09429 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.57■■□□□ 1.36
HMGB1P09429 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
HMGB1P09429 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.57■■□□□ 1.36
HMGB1P09429 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
HMGB1P09429 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.57■■□□□ 1.36
HMGB1P09429 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGB1P09429 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.56■■□□□ 1.36
HMGB1P09429 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGB1P09429 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.56■■□□□ 1.36
HMGB1P09429 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.56■■□□□ 1.36
HMGB1P09429 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.56■■□□□ 1.36
HMGB1P09429 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 AFG3L1P-217ENST00000557444 2447 ntBASIC23.56■■□□□ 1.36
HMGB1P09429 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
HMGB1P09429 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
HMGB1P09429 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.56■■□□□ 1.36
HMGB1P09429 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGB1P09429 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.56■■□□□ 1.36
HMGB1P09429 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGB1P09429 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGB1P09429 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HMGB1P09429 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGB1P09429 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
HMGB1P09429 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 AC073210.2-201ENST00000430369 194 ntBASIC23.55■■□□□ 1.36
HMGB1P09429 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 AC090192.1-201ENST00000517740 490 ntBASIC23.55■■□□□ 1.36
HMGB1P09429 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.55■■□□□ 1.36
HMGB1P09429 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms