Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TRIM38O00635 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRIM38O00635 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TRIM38O00635 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM38O00635 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM38O00635 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM38O00635 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM38O00635 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM38O00635 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM38O00635 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM38O00635 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM38O00635 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
TRIM38O00635 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
TRIM38O00635 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM38O00635 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TRIM38O00635 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.06■□□□□ 0.8
TRIM38O00635 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRIM38O00635 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM38O00635 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 AC105020.6-201ENST00000621523 1217 ntBASIC20.06■□□□□ 0.8
TRIM38O00635 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
TRIM38O00635 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM38O00635 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM38O00635 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM38O00635 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM38O00635 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 AC069544.1-201ENST00000609399 999 ntBASIC20.05■□□□□ 0.8
TRIM38O00635 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM38O00635 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM38O00635 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM38O00635 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
TRIM38O00635 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM38O00635 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM38O00635 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM38O00635 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM38O00635 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms