Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 AC007322.4-201ENST00000509611 723 ntBASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 MFSD11-216ENST00000590393 1141 ntBASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
CPSF4LA6NMK7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 AL162412.1-201ENST00000567129 965 ntBASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CPSF4LA6NMK7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CPSF4LA6NMK7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.54
CPSF4LA6NMK7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.39■□□□□ 0.54
CPSF4LA6NMK7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CPSF4LA6NMK7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.39■□□□□ 0.54
CPSF4LA6NMK7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CPSF4LA6NMK7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 TMEM179-206ENST00000616017 1645 ntBASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 AC011767.1-201ENST00000617410 1153 ntBASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 AC116562.4-201ENST00000641316 2276 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms