Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 KRT8P20-201ENST00000423953 1409 ntBASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 AL031963.3-201ENST00000606441 850 ntBASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 AL121829.2-201ENST00000620908 328 ntBASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 PTBP1P-201ENST00000554374 1601 ntBASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRAV40A0A0B4J280 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV40A0A0B4J280 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 SLC25A24-204ENST00000569674 2357 ntBASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 RPS2P55-201ENST00000397318 883 ntBASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 AC107956.1-201ENST00000494359 873 ntBASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 AC233702.5-201ENST00000584107 538 ntBASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.27■□□□□ 0.2
TRAV40A0A0B4J280 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV40A0A0B4J280 AC005229.4-201ENST00000610085 2198 ntBASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms