Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 AC053503.5-201ENST00000601508 636 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MIR6724-1-201ENST00000616420 92 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MIR6724-2-201ENST00000616483 92 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MIR6724-4-201ENST00000617390 92 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MIR6724-3-201ENST00000622482 92 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 BRD4-212ENST00000630599 726 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 KRT8P36-201ENST00000489121 1440 ntBASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 AC090164.3-201ENST00000610780 2143 ntBASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV1-1A0A0B4J248 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 PRTG-204ENST00000561292 833 ntTSL 3 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 EEF1DP3-203ENST00000566025 782 ntBASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 MIR4787-201ENST00000607364 84 ntBASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRAV1-1A0A0B4J248 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 HES6-206ENST00000409574 738 ntTSL 2 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 RARRES2P11-201ENST00000635158 484 ntBASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms