Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC7.09□□□□□ -1.28
VMP1Q96GC9 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
VMP1Q96GC9 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
VMP1Q96GC9 AC022819.1-201ENST00000563495 3910 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 SAMMSON-222ENST00000641901 2727 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 LINC00641-202ENST00000555688 1763 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 SNORD46-201ENST00000364043 104 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RN7SKP1-201ENST00000365525 307 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 MIR1231-201ENST00000408101 92 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 U3.31-201ENST00000408113 216 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RNU2-5P-201ENST00000410533 180 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 RPL35P8-201ENST00000433284 337 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 MORF4L1P5-201ENST00000433352 961 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AL954705.1-201ENST00000435277 559 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC016489.1-201ENST00000461109 375 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RN7SL233P-201ENST00000469988 277 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RN7SL228P-201ENST00000470060 303 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC135999.1-201ENST00000478962 479 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RN7SL563P-201ENST00000481233 298 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 RPS26P24-201ENST00000497656 331 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC018541.1-201ENST00000517706 764 ntTSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 IGLVI-42-201ENST00000522485 381 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 TMX3-204ENST00000562706 937 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC093283.1-201ENST00000565306 1075 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC016629.2-201ENST00000597341 199 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC005518.2-201ENST00000603254 282 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 OR5AU1-204ENST00000641822 1197 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC034111.1-201ENST00000562143 3770 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ICE2P1-201ENST00000512800 1849 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AL359263.1-201ENST00000441188 2796 ntBASIC7.08□□□□□ -1.28
VMP1Q96GC9 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
VMP1Q96GC9 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
VMP1Q96GC9 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
VMP1Q96GC9 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
VMP1Q96GC9 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC020978.6-201ENST00000571197 3177 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 RPL7-203ENST00000396466 762 ntTSL 3 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 NACAP7-201ENST00000407371 609 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 GAS8-AS1-201ENST00000408886 435 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 GSTA10P-201ENST00000412182 576 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC009237.9-201ENST00000414800 347 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC023141.1-201ENST00000419418 379 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 LINC00160-201ENST00000430635 693 ntTSL 5 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 AL450384.2-202ENST00000436485 656 ntTSL 3 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 PHBP4-201ENST00000437447 837 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 RPL6P24-201ENST00000445338 864 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 RN7SL332P-201ENST00000482163 254 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC096754.1-201ENST00000508904 818 ntBASIC7.07□□□□□ -1.28
VMP1Q96GC9 DKK2-202ENST00000510463 908 ntTSL 3 BASIC7.07□□□□□ -1.28
VMP1Q96GC9 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 235.9 ms