Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPIPA3F8WFD2 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 MIR498-201ENST00000385134 124 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 RPL5P8-201ENST00000396820 815 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 NPM1P31-201ENST00000399021 764 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 TRGV5P-201ENST00000419915 354 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 LINC01715-201ENST00000420776 624 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KLF7-IT1-201ENST00000428777 655 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC008799.2-201ENST00000484429 647 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC105391.1-201ENST00000503155 1045 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 NPY6R-201ENST00000503807 1112 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KNTC1-206ENST00000534995 1065 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 RN7SL835P-201ENST00000579920 262 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC012510.1-201ENST00000607946 759 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AL139123.1-201ENST00000612008 430 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 PTCHD3P1-201ENST00000612350 537 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 MIR6774-201ENST00000614651 70 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 MIR6883-201ENST00000614952 78 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 uc_338.37-201ENST00000620113 186 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AL121985.2-201ENST00000621192 555 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC073488.2-201ENST00000631903 751 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AC090643.1-201ENST00000623600 3100 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 XKRY2-202ENST00000623874 1581 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 XKRY-202ENST00000624960 1581 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 OR4D10-201ENST00000530162 2482 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 C11orf88-203ENST00000529167 3099 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 AL121835.2-201ENST00000624253 3502 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 EPS15P1-202ENST00000459691 2071 ntBASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NPIPA3F8WFD2 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NPIPA3F8WFD2 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC6.71□□□□□ -1.34
NPIPA3F8WFD2 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 226.4 ms