Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC7.72□□□□□ -1.17
APOEP02649 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC7.72□□□□□ -1.17
APOEP02649 OR6M3P-201ENST00000531567 700 ntBASIC7.72□□□□□ -1.17
APOEP02649 AC087257.2-201ENST00000538759 928 ntBASIC7.72□□□□□ -1.17
APOEP02649 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC7.72□□□□□ -1.17
APOEP02649 MIR4685-201ENST00000578185 69 ntBASIC7.72□□□□□ -1.17
APOEP02649 EIF1-207ENST00000591776 797 ntTSL 4 BASIC7.72□□□□□ -1.17
APOEP02649 ZNF208-202ENST00000597040 781 ntTSL 2 BASIC7.72□□□□□ -1.17
APOEP02649 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC7.72□□□□□ -1.17
APOEP02649 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC7.72□□□□□ -1.17
APOEP02649 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.72□□□□□ -1.17
APOEP02649 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
APOEP02649 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC7.72□□□□□ -1.17
APOEP02649 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
APOEP02649 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
APOEP02649 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC7.72□□□□□ -1.17
APOEP02649 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
APOEP02649 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
APOEP02649 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC7.71□□□□□ -1.17
APOEP02649 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC7.71□□□□□ -1.17
APOEP02649 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.71□□□□□ -1.17
APOEP02649 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 CYP39A1-205ENST00000619708 2269 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
APOEP02649 HSPA8P11-201ENST00000508840 1898 ntBASIC7.71□□□□□ -1.18
APOEP02649 ASIC5-201ENST00000537611 1692 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
APOEP02649 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 MIR301B-201ENST00000390813 78 ntBASIC7.71□□□□□ -1.18
APOEP02649 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC7.71□□□□□ -1.18
APOEP02649 AL355862.1-201ENST00000412705 353 ntBASIC7.71□□□□□ -1.18
APOEP02649 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC7.71□□□□□ -1.18
APOEP02649 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC7.71□□□□□ -1.18
APOEP02649 TAS2R2P-201ENST00000421146 910 ntBASIC7.71□□□□□ -1.18
APOEP02649 GAPDHP51-201ENST00000426454 1000 ntBASIC7.71□□□□□ -1.18
APOEP02649 Z83313.1-201ENST00000433780 718 ntBASIC7.71□□□□□ -1.18
APOEP02649 CR391992.1-201ENST00000438601 394 ntBASIC7.71□□□□□ -1.18
APOEP02649 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 FUNDC2P2-202ENST00000443452 493 ntBASIC7.71□□□□□ -1.18
APOEP02649 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC7.71□□□□□ -1.18
APOEP02649 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC7.71□□□□□ -1.18
APOEP02649 MIR4786-201ENST00000583954 80 ntBASIC7.71□□□□□ -1.18
APOEP02649 AC010618.2-201ENST00000596192 460 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC7.71□□□□□ -1.18
APOEP02649 AC080112.3-201ENST00000612552 880 ntBASIC7.71□□□□□ -1.18
APOEP02649 AC018558.4-201ENST00000622153 281 ntBASIC7.71□□□□□ -1.18
APOEP02649 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC7.71□□□□□ -1.18
APOEP02649 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC7.71□□□□□ -1.18
APOEP02649 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC7.71□□□□□ -1.18
APOEP02649 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
APOEP02649 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.71□□□□□ -1.18
APOEP02649 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.7□□□□□ -1.18
APOEP02649 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC7.7□□□□□ -1.18
APOEP02649 HDAC1P1-201ENST00000455482 1445 ntBASIC7.7□□□□□ -1.18
APOEP02649 AC068733.2-201ENST00000605434 1418 ntBASIC7.7□□□□□ -1.18
APOEP02649 AC090643.1-201ENST00000623600 3100 ntBASIC7.7□□□□□ -1.18
APOEP02649 SAMMSON-203ENST00000641005 2168 ntBASIC7.7□□□□□ -1.18
APOEP02649 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
APOEP02649 AP003471.1-202ENST00000319051 1988 ntBASIC7.7□□□□□ -1.18
APOEP02649 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
APOEP02649 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
APOEP02649 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.7□□□□□ -1.18
APOEP02649 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC7.7□□□□□ -1.18
APOEP02649 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 RNA5SP238-201ENST00000365464 120 ntBASIC7.7□□□□□ -1.18
APOEP02649 IFNA14-201ENST00000380222 990 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
APOEP02649 SNX18P13-201ENST00000412442 529 ntBASIC7.7□□□□□ -1.18
APOEP02649 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC7.7□□□□□ -1.18
APOEP02649 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC7.7□□□□□ -1.18
APOEP02649 ATP5LP4-201ENST00000434169 307 ntBASIC7.7□□□□□ -1.18
APOEP02649 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC7.7□□□□□ -1.18
APOEP02649 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC7.7□□□□□ -1.18
APOEP02649 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
APOEP02649 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC7.7□□□□□ -1.18
APOEP02649 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms