Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 FAM21FP-204ENST00000608637 956 ntBASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 SMG8-203ENST00000578922 2178 ntBASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RHBDD3Q9Y3P4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 AC007322.4-201ENST00000509611 723 ntBASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 DUX4L16-201ENST00000555130 1264 ntBASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 AC016405.3-201ENST00000607710 860 ntBASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RHBDD3Q9Y3P4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 MIR935-201ENST00000401179 91 ntBASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 AC022517.1-201ENST00000592429 346 ntBASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
RHBDD3Q9Y3P4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 KRT8P36-201ENST00000489121 1440 ntBASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CNN2P6-201ENST00000439038 900 ntBASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 BID-214ENST00000617586 542 ntTSL 5 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms