Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 AC069544.1-201ENST00000609399 999 ntBASIC21.48■■□□□ 1.03
SIX4Q9UIU6 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX4Q9UIU6 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SIX4Q9UIU6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 KRT18P29-201ENST00000397031 1267 ntBASIC21.46■■□□□ 1.03
SIX4Q9UIU6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 TMEM191A-211ENST00000637163 1067 ntBASIC21.46■■□□□ 1.03
SIX4Q9UIU6 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX4Q9UIU6 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.45■■□□□ 1.03
SIX4Q9UIU6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 KRT17P3-201ENST00000420566 1262 ntBASIC21.45■■□□□ 1.02
SIX4Q9UIU6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SIX4Q9UIU6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 AC098590.1-201ENST00000468126 897 ntBASIC21.44■■□□□ 1.02
SIX4Q9UIU6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 LINC01521-201ENST00000504184 1943 ntBASIC21.44■■□□□ 1.02
SIX4Q9UIU6 AC099778.1-201ENST00000568593 1911 ntBASIC21.44■■□□□ 1.02
SIX4Q9UIU6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX4Q9UIU6 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.43■■□□□ 1.02
SIX4Q9UIU6 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX4Q9UIU6 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX4Q9UIU6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms