Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L2-201ENST00000561772 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L6-201ENST00000626483 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L1-201ENST00000627662 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L8-201ENST00000629013 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L3-201ENST00000630187 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L7-201ENST00000630678 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 DUX4L5-201ENST00000630834 1275 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 AC123595.1-201ENST00000440769 1046 ntBASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCAL1Q9NZC9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCAL1Q9NZC9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 RBM17P2-201ENST00000616397 1405 ntBASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCAL1Q9NZC9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMARCAL1Q9NZC9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.95
SMARCAL1Q9NZC9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
SMARCAL1Q9NZC9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 AC007322.3-201ENST00000426526 701 ntBASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.01■□□□□ 0.95
SMARCAL1Q9NZC9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms