Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
TDP1Q9NUW8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 TSPY15P-201ENST00000457163 923 ntBASIC20.7■□□□□ 0.9
TDP1Q9NUW8 AL355075.4-201ENST00000554988 638 ntBASIC20.7■□□□□ 0.9
TDP1Q9NUW8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TDP1Q9NUW8 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 CD177P1-201ENST00000606252 935 ntBASIC20.69■□□□□ 0.9
TDP1Q9NUW8 AC026471.5-201ENST00000615068 467 ntBASIC20.69■□□□□ 0.9
TDP1Q9NUW8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 AC006128.1-201ENST00000624704 1661 ntBASIC20.69■□□□□ 0.9
TDP1Q9NUW8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.69■□□□□ 0.9
TDP1Q9NUW8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 AC005229.4-201ENST00000610085 2198 ntBASIC20.68■□□□□ 0.9
TDP1Q9NUW8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TDP1Q9NUW8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 AL355355.2-201ENST00000442321 338 ntBASIC20.67■□□□□ 0.9
TDP1Q9NUW8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 AP003071.4-201ENST00000562276 1284 ntBASIC20.67■□□□□ 0.9
TDP1Q9NUW8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 LINC00565-201ENST00000562710 2331 ntBASIC20.67■□□□□ 0.9
TDP1Q9NUW8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.67■□□□□ 0.9
TDP1Q9NUW8 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 AC073195.1-201ENST00000607241 877 ntBASIC20.66■□□□□ 0.9
TDP1Q9NUW8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.66■□□□□ 0.9
TDP1Q9NUW8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms