Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF38Q9H0F5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF38Q9H0F5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 SNORA78-201ENST00000459373 127 ntBASIC20.79■□□□□ 0.92
RNF38Q9H0F5 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 AC233702.5-201ENST00000584107 538 ntBASIC20.79■□□□□ 0.92
RNF38Q9H0F5 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 AL137060.1-201ENST00000618151 2648 ntBASIC20.79■□□□□ 0.92
RNF38Q9H0F5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
RNF38Q9H0F5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF38Q9H0F5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 AC012618.2-201ENST00000428058 849 ntBASIC20.77■□□□□ 0.92
RNF38Q9H0F5 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF38Q9H0F5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RNF38Q9H0F5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RNF38Q9H0F5 AC092720.2-201ENST00000602388 1665 ntBASIC20.77■□□□□ 0.91
RNF38Q9H0F5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RNF38Q9H0F5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
RNF38Q9H0F5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF38Q9H0F5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF38Q9H0F5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms