Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM54Q9BYV2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 AC026185.1-201ENST00000445748 174 ntBASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CYP2T3P-201ENST00000601990 817 ntBASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM54Q9BYV2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 SMG8-203ENST00000578922 2178 ntBASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 AL589743.5-201ENST00000616611 1050 ntBASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 AC010980.2-201ENST00000587099 1412 ntBASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM54Q9BYV2 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 AC133552.2-202ENST00000575694 574 ntBASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 AC105020.6-201ENST00000621523 1217 ntBASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM54Q9BYV2 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 PCDHAC2-203ENST00000615316 3011 ntBASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 CDCA4P2-201ENST00000441182 718 ntBASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms