Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CHMP4CQ96CF2 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CHMP4CQ96CF2 AC073130.3-201ENST00000624389 2278 ntBASIC23.84■■□□□ 1.41
CHMP4CQ96CF2 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 AL121603.2-201ENST00000557373 2117 ntBASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHMP4CQ96CF2 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CHMP4CQ96CF2 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
CHMP4CQ96CF2 AC087633.2-202ENST00000565166 1439 ntBASIC23.83■■□□□ 1.4
CHMP4CQ96CF2 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.4
CHMP4CQ96CF2 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CHMP4CQ96CF2 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 AC008687.6-201ENST00000596318 630 ntBASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.82■■□□□ 1.4
CHMP4CQ96CF2 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 KRT18P29-201ENST00000397031 1267 ntBASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 AC006058.3-201ENST00000606217 1069 ntBASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 AL356652.1-201ENST00000615962 565 ntBASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHMP4CQ96CF2 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 AC092368.3-202ENST00000574180 1591 ntBASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CHMP4CQ96CF2 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHMP4CQ96CF2 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms