Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 MFSD11-216ENST00000590393 1141 ntBASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 PTBP1P-201ENST00000554374 1601 ntBASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.74■□□□□ 0.91
ATG4AQ8WYN0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AC013268.1-206ENST00000638368 961 ntBASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AC112229.1-201ENST00000639295 961 ntBASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.73■□□□□ 0.91
ATG4AQ8WYN0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 AC137761.2-201ENST00000561729 223 ntBASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 AC145350.3-201ENST00000569033 163 ntBASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 TREX1-205ENST00000625293 1783 ntBASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4AQ8WYN0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 AC007322.4-201ENST00000509611 723 ntBASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 MIR6821-201ENST00000617625 74 ntBASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4AQ8WYN0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 KRT18P5-201ENST00000436075 1291 ntBASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms