Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC116050.2-201ENST00000612102 1779 ntBASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 RPS20-210ENST00000523936 899 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TSPY7P-201ENST00000431358 1114 ntBASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MAX-217ENST00000557277 728 ntTSL 3 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 RN7SL471P-201ENST00000580476 299 ntBASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 KRT18P21-201ENST00000515767 1272 ntBASIC6.15□□□□□ -1.42
SYNE1Q8NF91 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 STX5-203ENST00000394690 1568 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 PBX1-209ENST00000485769 834 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AC107956.1-201ENST00000494359 873 ntBASIC6.15□□□□□ -1.42
SYNE1Q8NF91 CBFB-203ENST00000561924 584 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 LINC01023-201ENST00000606054 436 ntBASIC6.15□□□□□ -1.42
SYNE1Q8NF91 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 AC233702.5-201ENST00000584107 538 ntBASIC6.15□□□□□ -1.42
SYNE1Q8NF91 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SYNE1Q8NF91 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC6.15□□□□□ -1.43
SYNE1Q8NF91 AP003071.4-201ENST00000562276 1284 ntBASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms