Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.71■□□□□ 0.59
CLIP4Q8N3C7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.71■□□□□ 0.58
CLIP4Q8N3C7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 AC137761.2-201ENST00000561729 223 ntBASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 AC145350.3-201ENST00000569033 163 ntBASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP4Q8N3C7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 AL591742.1-201ENST00000604433 565 ntBASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 AC138932.1-201ENST00000534164 6830 ntBASIC18.69■□□□□ 0.58
CLIP4Q8N3C7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 RARRES2P6-201ENST00000567333 442 ntBASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 FAM21FP-204ENST00000608637 956 ntBASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.68■□□□□ 0.58
CLIP4Q8N3C7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms