Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 TSPY14P-201ENST00000303979 915 ntBASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 CR392000.1-201ENST00000624770 1228 ntBASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
VPS13DQ5THJ4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 ECEL1P2-202ENST00000465689 757 ntBASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 DGCR10-201ENST00000609839 495 ntBASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 FAM8A6P-201ENST00000407496 1135 ntBASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 AC009947.2-201ENST00000444014 672 ntBASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 WWOX-216ENST00000569818 525 ntBASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13DQ5THJ4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 PNN-205ENST00000556530 601 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13DQ5THJ4 H19-201ENST00000411754 1788 ntTSL 5 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms