Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 KSR1P1-201ENST00000446298 240 ntBASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 AC010203.1-204ENST00000548782 407 ntBASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.67■■□□□ 1.54
CCDC88AQ3V6T2 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC88AQ3V6T2 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC24.67■■□□□ 1.54
CCDC88AQ3V6T2 AL358472.4-201ENST00000633140 710 ntBASIC24.67■■□□□ 1.54
CCDC88AQ3V6T2 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
CCDC88AQ3V6T2 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 AL024507.2-201ENST00000606070 2574 ntBASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC88AQ3V6T2 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC88AQ3V6T2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 AC004264.1-201ENST00000608354 794 ntBASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC88AQ3V6T2 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
CCDC88AQ3V6T2 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC88AQ3V6T2 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC88AQ3V6T2 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.64■■□□□ 1.53
CCDC88AQ3V6T2 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC88AQ3V6T2 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 AC063952.2-201ENST00000498792 1227 ntBASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms