Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
HDAC4P56524 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
HDAC4P56524 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 BX119927.1-201ENST00000636596 1552 ntBASIC20.93■□□□□ 0.94
HDAC4P56524 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 MYC-209ENST00000641252 345 ntBASIC20.92■□□□□ 0.94
HDAC4P56524 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
HDAC4P56524 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HDAC4P56524 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.92■□□□□ 0.94
HDAC4P56524 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HDAC4P56524 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC4P56524 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.92■□□□□ 0.94
HDAC4P56524 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
HDAC4P56524 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HDAC4P56524 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.91■□□□□ 0.94
HDAC4P56524 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HDAC4P56524 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 PCDHAC2-203ENST00000615316 3011 ntBASIC20.91■□□□□ 0.94
HDAC4P56524 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.91■□□□□ 0.94
HDAC4P56524 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
HDAC4P56524 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC4P56524 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
HDAC4P56524 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC4P56524 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 TCF3P1-201ENST00000423021 1937 ntBASIC20.9■□□□□ 0.94
HDAC4P56524 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.9■□□□□ 0.94
HDAC4P56524 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC4P56524 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.9■□□□□ 0.94
HDAC4P56524 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.9■□□□□ 0.94
HDAC4P56524 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC4P56524 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
HDAC4P56524 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC4P56524 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HDAC4P56524 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC4P56524 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HDAC4P56524 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
HDAC4P56524 KRT8P17-201ENST00000453110 1448 ntBASIC20.89■□□□□ 0.94
HDAC4P56524 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 ID1-201ENST00000376105 1233 ntBASIC20.89■□□□□ 0.93
HDAC4P56524 AC073210.2-201ENST00000430369 194 ntBASIC20.89■□□□□ 0.93
HDAC4P56524 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.89■□□□□ 0.93
HDAC4P56524 AL031963.3-201ENST00000606441 850 ntBASIC20.89■□□□□ 0.93
HDAC4P56524 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC4P56524 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.89■□□□□ 0.93
HDAC4P56524 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.89■□□□□ 0.93
HDAC4P56524 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms