Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 TNXA-203ENST00000507684 2038 ntBASIC20.94■□□□□ 0.94
LIG3P49916 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.94■□□□□ 0.94
LIG3P49916 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.94■□□□□ 0.94
LIG3P49916 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.94■□□□□ 0.94
LIG3P49916 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIG3P49916 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIG3P49916 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.93■□□□□ 0.94
LIG3P49916 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIG3P49916 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.93■□□□□ 0.94
LIG3P49916 AL050303.2-201ENST00000619798 666 ntBASIC20.93■□□□□ 0.94
LIG3P49916 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LIG3P49916 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIG3P49916 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.93■□□□□ 0.94
LIG3P49916 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.93■□□□□ 0.94
LIG3P49916 RBM17P2-201ENST00000616397 1405 ntBASIC20.93■□□□□ 0.94
LIG3P49916 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.93■□□□□ 0.94
LIG3P49916 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
LIG3P49916 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIG3P49916 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIG3P49916 HLA-L-209ENST00000420110 1011 ntBASIC20.92■□□□□ 0.94
LIG3P49916 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.92■□□□□ 0.94
LIG3P49916 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIG3P49916 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LIG3P49916 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.92■□□□□ 0.94
LIG3P49916 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIG3P49916 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.91■□□□□ 0.94
LIG3P49916 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.91■□□□□ 0.94
LIG3P49916 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
LIG3P49916 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 NCF1B-203ENST00000435988 1254 ntBASIC20.91■□□□□ 0.94
LIG3P49916 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.91■□□□□ 0.94
LIG3P49916 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
LIG3P49916 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.91■□□□□ 0.94
LIG3P49916 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LIG3P49916 NEFHP1-201ENST00000412845 2629 ntBASIC20.91■□□□□ 0.94
LIG3P49916 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIG3P49916 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.9■□□□□ 0.94
LIG3P49916 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
LIG3P49916 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.9■□□□□ 0.94
LIG3P49916 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
LIG3P49916 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.9■□□□□ 0.94
LIG3P49916 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.9■□□□□ 0.94
LIG3P49916 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms