Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 PAA1YDR071C 576 nt1.1□□□□□ -2.23
UPF3P48412 RPS27BYHR021C 249 nt1.1□□□□□ -2.23
UPF3P48412 ECM12YHR021W-A 456 nt1.1□□□□□ -2.23
UPF3P48412 YNL028WYNL028W 318 nt1.1□□□□□ -2.23
UPF3P48412 YOR008C-AYOR008C-A 225 nt1.09□□□□□ -2.23
UPF3P48412 IES4YOR189W 351 nt1.09□□□□□ -2.23
UPF3P48412 YPL044CYPL044C 549 nt1.09□□□□□ -2.23
UPF3P48412 NST1YNL091W 3723 nt1.07□□□□□ -2.24
UPF3P48412 SPT7YBR081C 3999 nt1.07□□□□□ -2.24
UPF3P48412 YGR130CYGR130C 2451 nt1.06□□□□□ -2.24
UPF3P48412 SIP4YJL089W 2490 nt1.05□□□□□ -2.24
UPF3P48412 YCR022CYCR022C 345 nt1.05□□□□□ -2.24
UPF3P48412 YDL196WYDL196W 330 nt1.05□□□□□ -2.24
UPF3P48412 YEL020C-BYEL020C-B 198 nt1.05□□□□□ -2.24
UPF3P48412 tV(UAC)BtV(UAC)B 74 nt1.05□□□□□ -2.24
UPF3P48412 tV(UAC)DtV(UAC)D 74 nt1.05□□□□□ -2.24
UPF3P48412 CMC4YMR194C-B 222 nt1.05□□□□□ -2.24
UPF3P48412 SCC2YDR180W 4482 nt1.05□□□□□ -2.24
UPF3P48412 NOP9YJL010C 2001 nt1.05□□□□□ -2.24
UPF3P48412 YPL152W-AYPL152W-A 99 nt1.04□□□□□ -2.24
UPF3P48412 KAP120YPL125W 3099 nt1.04□□□□□ -2.24
UPF3P48412 VAM6YDL077C 3150 nt1.04□□□□□ -2.24
UPF3P48412 SGF11YPL047W 300 nt1.03□□□□□ -2.24
UPF3P48412 RPL26BYGR034W 384 nt1.02□□□□□ -2.25
UPF3P48412 YHR063W-AYHR063W-A 336 nt1.02□□□□□ -2.25
UPF3P48412 MCM10YIL150C 1716 nt1.02□□□□□ -2.25
UPF3P48412 YLR120W-AYLR120W-A 102 nt1.02□□□□□ -2.25
UPF3P48412 YMR172C-AYMR172C-A 384 nt1.02□□□□□ -2.25
UPF3P48412 YJL197C-AYJL197C-A 282 nt1.01□□□□□ -2.25
UPF3P48412 YOR015WYOR015W 360 nt1.01□□□□□ -2.25
UPF3P48412 YGL052WYGL052W 306 nt1□□□□□ -2.25
UPF3P48412 EMT1tM(CAU)D 73 nt1□□□□□ -2.25
UPF3P48412 EMT5tM(CAU)J1 73 nt1□□□□□ -2.25
UPF3P48412 EMT3tM(CAU)J2 73 nt1□□□□□ -2.25
UPF3P48412 EMT4tM(CAU)M 73 nt1□□□□□ -2.25
UPF3P48412 EMT2tM(CAU)O2 73 nt1□□□□□ -2.25
UPF3P48412 YNL211CYNL211C 261 nt0.99□□□□□ -2.25
UPF3P48412 snR49snR49 165 nt0.99□□□□□ -2.25
UPF3P48412 YPR117WYPR117W 7470 nt0.98□□□□□ -2.25
UPF3P48412 IML1YJR138W 4755 nt0.98□□□□□ -2.25
UPF3P48412 snR8snR8 190 nt0.97□□□□□ -2.25
UPF3P48412 YPR092WYPR092W 306 nt0.97□□□□□ -2.25
UPF3P48412 PMP1YCR024C-A 123 nt0.96□□□□□ -2.26
UPF3P48412 YGL188C-AYGL188C-A 141 nt0.96□□□□□ -2.26
UPF3P48412 snR55snR55 98 nt0.95□□□□□ -2.26
UPF3P48412 YMR307C-AYMR307C-A 195 nt0.95□□□□□ -2.26
UPF3P48412 YOL155W-AYOL155W-A 135 nt0.94□□□□□ -2.26
UPF3P48412 BFR2YDR299W 1605 nt0.93□□□□□ -2.26
UPF3P48412 BEM2YER155C 6504 nt0.93□□□□□ -2.26
UPF3P48412 YDR366CYDR366C 399 nt0.93□□□□□ -2.26
UPF3P48412 YOR072W-BYOR072W-B 162 nt0.93□□□□□ -2.26
UPF3P48412 SEC8YPR055W 3198 nt0.91□□□□□ -2.26
UPF3P48412 YCR018C-AYCR018C-A 255 nt0.91□□□□□ -2.26
UPF3P48412 snR74snR74 88 nt0.91□□□□□ -2.26
UPF3P48412 YDR354C-AYDR354C-A 144 nt0.91□□□□□ -2.26
UPF3P48412 tF(GAA)QtF(GAA)Q 75 nt0.91□□□□□ -2.26
UPF3P48412 YGL041CYGL041C 204 nt0.91□□□□□ -2.26
UPF3P48412 YLL019W-AYLL019W-A 93 nt0.91□□□□□ -2.26
UPF3P48412 YAL067W-AYAL067W-A 228 nt0.91□□□□□ -2.26
UPF3P48412 ABF2YMR072W 552 nt0.91□□□□□ -2.26
UPF3P48412 NPR2YEL062W 1848 nt0.9□□□□□ -2.27
UPF3P48412 YIR030W-AYIR030W-A 384 nt0.88□□□□□ -2.27
UPF3P48412 snR80snR80 171 nt0.87□□□□□ -2.27
UPF3P48412 YJL026C-AYJL026C-A 222 nt0.86□□□□□ -2.27
UPF3P48412 YLR399W-AYLR399W-A 105 nt0.86□□□□□ -2.27
UPF3P48412 YBR182C-AYBR182C-A 195 nt0.86□□□□□ -2.27
UPF3P48412 PAU24YBR301W 363 nt0.86□□□□□ -2.27
UPF3P48412 YKU70YMR284W 1809 nt0.86□□□□□ -2.27
UPF3P48412 SEC1YDR164C 2175 nt0.86□□□□□ -2.27
UPF3P48412 YDL073WYDL073W 2955 nt0.84□□□□□ -2.27
UPF3P48412 LTE1YAL024C 4308 nt0.84□□□□□ -2.27
UPF3P48412 YFR012W-AYFR012W-A 87 nt0.84□□□□□ -2.27
UPF3P48412 snR190snR190 190 nt0.84□□□□□ -2.27
UPF3P48412 PRP16YKR086W 3216 nt0.83□□□□□ -2.28
UPF3P48412 YMR158W-BYMR158W-B 321 nt0.83□□□□□ -2.28
UPF3P48412 COX5BYIL111W 456 nt0.82□□□□□ -2.28
UPF3P48412 YKL100W-AYKL100W-A 90 nt0.82□□□□□ -2.28
UPF3P48412 RKR1YMR247C 4689 nt0.82□□□□□ -2.28
UPF3P48412 YPR159C-AYPR159C-A 102 nt0.81□□□□□ -2.28
UPF3P48412 YPR160W-AYPR160W-A 81 nt0.81□□□□□ -2.28
UPF3P48412 UBP3YER151C 2739 nt0.8□□□□□ -2.28
UPF3P48412 CHS6YJL099W 2241 nt0.8□□□□□ -2.28
UPF3P48412 YOR302WYOR302W 78 nt0.8□□□□□ -2.28
UPF3P48412 YML002WYML002W 2214 nt0.8□□□□□ -2.28
UPF3P48412 DOP1YDR141C 5097 nt0.79□□□□□ -2.28
UPF3P48412 ASE1YOR058C 2658 nt0.79□□□□□ -2.28
UPF3P48412 YDL185C-AYDL185C-A 228 nt0.79□□□□□ -2.28
UPF3P48412 PAM16YJL104W 450 nt0.79□□□□□ -2.28
UPF3P48412 COY1YKL179C 2040 nt0.79□□□□□ -2.28
UPF3P48412 BLI1YKL061W 342 nt0.78□□□□□ -2.28
UPF3P48412 YLR282CYLR282C 342 nt0.78□□□□□ -2.28
UPF3P48412 ULI1YFR026C 510 nt0.77□□□□□ -2.29
UPF3P48412 YGL123C-AYGL123C-A 231 nt0.77□□□□□ -2.29
UPF3P48412 COX12YLR038C 252 nt0.77□□□□□ -2.29
UPF3P48412 RPS30BYOR182C 192 nt0.77□□□□□ -2.29
UPF3P48412 YOR345CYOR345C 351 nt0.77□□□□□ -2.29
UPF3P48412 YBR131C-AYBR131C-A 90 nt0.76□□□□□ -2.29
UPF3P48412 FYV10YIL097W 1551 nt0.75□□□□□ -2.29
UPF3P48412 SPG3YDR504C 384 nt0.75□□□□□ -2.29
UPF3P48412 YIL134C-AYIL134C-A 204 nt0.74□□□□□ -2.29
Retrieved 100 of 7,029 protein–RNA pairs in 93.7 ms