Protein–RNA interactions for Protein: P47821

SSN8, RNA polymerase II holoenzyme cyclin-like subunit, yeastyeast

Predictions only

Length 323 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSN8P47821 tH(GUG)KtH(GUG)K 72 nt1.11□□□□□ -2.23
SSN8P47821 tH(GUG)MtH(GUG)M 72 nt1.11□□□□□ -2.23
SSN8P47821 YHR063W-AYHR063W-A 336 nt1.11□□□□□ -2.23
SSN8P47821 YOR218CYOR218C 420 nt1.11□□□□□ -2.23
SSN8P47821 YPR092WYPR092W 306 nt1.11□□□□□ -2.23
SSN8P47821 NUP157YER105C 4176 nt1.11□□□□□ -2.23
SSN8P47821 AIM44YPL158C 2277 nt1.1□□□□□ -2.23
SSN8P47821 snR80snR80 171 nt1.1□□□□□ -2.23
SSN8P47821 YDR354C-AYDR354C-A 144 nt1.1□□□□□ -2.23
SSN8P47821 NST1YNL091W 3723 nt1.1□□□□□ -2.23
SSN8P47821 VAM6YDL077C 3150 nt1.1□□□□□ -2.23
SSN8P47821 NUP145YGL092W 3954 nt1.09□□□□□ -2.23
SSN8P47821 RPL33BYOR234C 324 nt1.09□□□□□ -2.23
SSN8P47821 WAR1YML076C 2835 nt1.08□□□□□ -2.24
SSN8P47821 SCC2YDR180W 4482 nt1.08□□□□□ -2.24
SSN8P47821 OLI1Q0130 231 nt1.08□□□□□ -2.24
SSN8P47821 snR49snR49 165 nt1.08□□□□□ -2.24
SSN8P47821 ROM2YLR371W 4071 nt1.08□□□□□ -2.24
SSN8P47821 NPR2YEL062W 1848 nt1.08□□□□□ -2.24
SSN8P47821 YJR029WYJR029W 5268 nt1.07□□□□□ -2.24
SSN8P47821 YPR137C-BYPR137C-B 5268 nt1.07□□□□□ -2.24
SSN8P47821 YDR366CYDR366C 399 nt1.07□□□□□ -2.24
SSN8P47821 tF(GAA)QtF(GAA)Q 75 nt1.07□□□□□ -2.24
SSN8P47821 YNL211CYNL211C 261 nt1.07□□□□□ -2.24
SSN8P47821 YBR200W-AYBR200W-A 165 nt1.07□□□□□ -2.24
SSN8P47821 snR8snR8 190 nt1.06□□□□□ -2.24
SSN8P47821 YLL019W-AYLL019W-A 93 nt1.06□□□□□ -2.24
SSN8P47821 YFR012W-AYFR012W-A 87 nt1.05□□□□□ -2.24
SSN8P47821 ASE1YOR058C 2658 nt1.05□□□□□ -2.24
SSN8P47821 SPT7YBR081C 3999 nt1.04□□□□□ -2.24
SSN8P47821 YGL188C-AYGL188C-A 141 nt1.03□□□□□ -2.24
SSN8P47821 YJL026C-AYJL026C-A 222 nt1.03□□□□□ -2.24
SSN8P47821 ABF2YMR072W 552 nt1.03□□□□□ -2.24
SSN8P47821 YMR307C-AYMR307C-A 195 nt1.03□□□□□ -2.24
SSN8P47821 ANS1YHR126C 480 nt1.02□□□□□ -2.25
SSN8P47821 CMC4YMR194C-B 222 nt1.02□□□□□ -2.25
SSN8P47821 YOR302WYOR302W 78 nt1.02□□□□□ -2.25
SSN8P47821 MYO1YHR023W 5787 nt1.02□□□□□ -2.25
SSN8P47821 YDL185C-AYDL185C-A 228 nt1.01□□□□□ -2.25
SSN8P47821 YOL155W-AYOL155W-A 135 nt1.01□□□□□ -2.25
SSN8P47821 snR55snR55 98 nt1□□□□□ -2.25
SSN8P47821 YIR030W-AYIR030W-A 384 nt1□□□□□ -2.25
SSN8P47821 KAP120YPL125W 3099 nt1□□□□□ -2.25
SSN8P47821 YDL196WYDL196W 330 nt0.99□□□□□ -2.25
SSN8P47821 NOP9YJL010C 2001 nt0.99□□□□□ -2.25
SSN8P47821 DOP1YDR141C 5097 nt0.98□□□□□ -2.25
SSN8P47821 BEM2YER155C 6504 nt0.98□□□□□ -2.25
SSN8P47821 RKR1YMR247C 4689 nt0.98□□□□□ -2.25
SSN8P47821 IML1YJR138W 4755 nt0.98□□□□□ -2.25
SSN8P47821 BFR2YDR299W 1605 nt0.97□□□□□ -2.25
SSN8P47821 YIL134C-AYIL134C-A 204 nt0.97□□□□□ -2.25
SSN8P47821 YOR072W-BYOR072W-B 162 nt0.97□□□□□ -2.25
SSN8P47821 SIP4YJL089W 2490 nt0.96□□□□□ -2.26
SSN8P47821 EMT1tM(CAU)D 73 nt0.96□□□□□ -2.26
SSN8P47821 EMT5tM(CAU)J1 73 nt0.96□□□□□ -2.26
SSN8P47821 EMT3tM(CAU)J2 73 nt0.96□□□□□ -2.26
SSN8P47821 EMT4tM(CAU)M 73 nt0.96□□□□□ -2.26
SSN8P47821 EMT2tM(CAU)O2 73 nt0.96□□□□□ -2.26
SSN8P47821 tV(UAC)BtV(UAC)B 74 nt0.96□□□□□ -2.26
SSN8P47821 tV(UAC)DtV(UAC)D 74 nt0.96□□□□□ -2.26
SSN8P47821 YAL067W-AYAL067W-A 228 nt0.96□□□□□ -2.26
SSN8P47821 SMC1YFL008W 3678 nt0.95□□□□□ -2.26
SSN8P47821 YGR130CYGR130C 2451 nt0.95□□□□□ -2.26
SSN8P47821 PAA1YDR071C 576 nt0.95□□□□□ -2.26
SSN8P47821 YOR345CYOR345C 351 nt0.95□□□□□ -2.26
SSN8P47821 YBR131C-AYBR131C-A 90 nt0.94□□□□□ -2.26
SSN8P47821 YBR182C-AYBR182C-A 195 nt0.94□□□□□ -2.26
SSN8P47821 YDL073WYDL073W 2955 nt0.94□□□□□ -2.26
SSN8P47821 YKU70YMR284W 1809 nt0.94□□□□□ -2.26
SSN8P47821 YMR158W-BYMR158W-B 321 nt0.93□□□□□ -2.26
SSN8P47821 YPL044CYPL044C 549 nt0.93□□□□□ -2.26
SSN8P47821 YOR161W-AYOR161W-A 81 nt0.92□□□□□ -2.26
SSN8P47821 COY1YKL179C 2040 nt0.92□□□□□ -2.26
SSN8P47821 COX12YLR038C 252 nt0.91□□□□□ -2.26
SSN8P47821 YNL097C-BYNL097C-B 123 nt0.91□□□□□ -2.26
SSN8P47821 RPS30BYOR182C 192 nt0.91□□□□□ -2.26
SSN8P47821 ISD11YER048W-A 285 nt0.9□□□□□ -2.27
SSN8P47821 PMP1YCR024C-A 123 nt0.88□□□□□ -2.27
SSN8P47821 YPR117WYPR117W 7470 nt0.87□□□□□ -2.27
SSN8P47821 YCR018C-AYCR018C-A 255 nt0.87□□□□□ -2.27
SSN8P47821 snR190snR190 190 nt0.87□□□□□ -2.27
SSN8P47821 TTI1YKL033W 3117 nt0.86□□□□□ -2.27
SSN8P47821 YCR038W-AYCR038W-A 126 nt0.86□□□□□ -2.27
SSN8P47821 YLR282CYLR282C 342 nt0.86□□□□□ -2.27
SSN8P47821 YER053C-AYER053C-A 114 nt0.85□□□□□ -2.27
SSN8P47821 YGL123C-AYGL123C-A 231 nt0.85□□□□□ -2.27
SSN8P47821 RPL26BYGR034W 384 nt0.85□□□□□ -2.27
SSN8P47821 PRP16YKR086W 3216 nt0.85□□□□□ -2.27
SSN8P47821 ULI1YFR026C 510 nt0.84□□□□□ -2.27
SSN8P47821 APQ12YIL040W 417 nt0.84□□□□□ -2.27
SSN8P47821 PAM16YJL104W 450 nt0.83□□□□□ -2.28
SSN8P47821 tN(GUU)QtN(GUU)Q 71 nt0.81□□□□□ -2.28
SSN8P47821 HAL9YOL089C 3093 nt0.81□□□□□ -2.28
SSN8P47821 CHS6YJL099W 2241 nt0.8□□□□□ -2.28
SSN8P47821 JLP2YMR132C 627 nt0.8□□□□□ -2.28
SSN8P47821 YPR160W-AYPR160W-A 81 nt0.8□□□□□ -2.28
SSN8P47821 PRP5YBR237W 2550 nt0.8□□□□□ -2.28
SSN8P47821 COX5BYIL111W 456 nt0.79□□□□□ -2.28
SSN8P47821 YIL002W-AYIL002W-A 210 nt0.78□□□□□ -2.28
SSN8P47821 SPG3YDR504C 384 nt0.77□□□□□ -2.29
Retrieved 100 of 7,029 protein–RNA pairs in 28 ms