Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.41■□□□□ 0.7
HNF4AP41235 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.41■□□□□ 0.7
HNF4AP41235 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
HNF4AP41235 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.41■□□□□ 0.7
HNF4AP41235 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 KRT17P1-201ENST00000399211 1546 ntBASIC19.41■□□□□ 0.7
HNF4AP41235 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 AL391422.3-201ENST00000603791 2761 ntBASIC19.4■□□□□ 0.7
HNF4AP41235 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.4■□□□□ 0.7
HNF4AP41235 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.4■□□□□ 0.7
HNF4AP41235 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 SLC29A4P1-201ENST00000398760 971 ntBASIC19.4■□□□□ 0.7
HNF4AP41235 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.4■□□□□ 0.7
HNF4AP41235 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.4■□□□□ 0.7
HNF4AP41235 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.4■□□□□ 0.7
HNF4AP41235 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 TCF3P1-201ENST00000423021 1937 ntBASIC19.4■□□□□ 0.7
HNF4AP41235 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HNF4AP41235 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.39■□□□□ 0.7
HNF4AP41235 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HNF4AP41235 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HNF4AP41235 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.39■□□□□ 0.7
HNF4AP41235 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.39■□□□□ 0.69
HNF4AP41235 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HNF4AP41235 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.39■□□□□ 0.69
HNF4AP41235 LSM12P1-201ENST00000411836 588 ntBASIC19.39■□□□□ 0.69
HNF4AP41235 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.39■□□□□ 0.69
HNF4AP41235 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.39■□□□□ 0.69
HNF4AP41235 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HNF4AP41235 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.39■□□□□ 0.69
HNF4AP41235 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.39■□□□□ 0.69
HNF4AP41235 AL589743.5-201ENST00000616611 1050 ntBASIC19.39■□□□□ 0.69
HNF4AP41235 AL109923.1-201ENST00000618799 583 ntBASIC19.39■□□□□ 0.69
HNF4AP41235 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HNF4AP41235 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HNF4AP41235 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HNF4AP41235 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
HNF4AP41235 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.38■□□□□ 0.69
HNF4AP41235 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
HNF4AP41235 TSPY6P-201ENST00000448518 926 ntBASIC19.38■□□□□ 0.69
HNF4AP41235 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.38■□□□□ 0.69
HNF4AP41235 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HNF4AP41235 AC112907.3-201ENST00000577781 2400 ntBASIC19.38■□□□□ 0.69
HNF4AP41235 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.38■□□□□ 0.69
HNF4AP41235 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.38■□□□□ 0.69
HNF4AP41235 BX119927.1-201ENST00000636596 1552 ntBASIC19.38■□□□□ 0.69
HNF4AP41235 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HNF4AP41235 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HNF4AP41235 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
HNF4AP41235 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.37■□□□□ 0.69
HNF4AP41235 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
HNF4AP41235 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HNF4AP41235 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.37■□□□□ 0.69
HNF4AP41235 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms