Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFC3P40938 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFC3P40938 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFC3P40938 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFC3P40938 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.34■□□□□ 0.53
RFC3P40938 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFC3P40938 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.34■□□□□ 0.53
RFC3P40938 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
RFC3P40938 AC124283.5-201ENST00000624661 1809 ntBASIC18.34■□□□□ 0.53
RFC3P40938 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.34■□□□□ 0.53
RFC3P40938 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.34■□□□□ 0.53
RFC3P40938 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFC3P40938 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.34■□□□□ 0.53
RFC3P40938 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
RFC3P40938 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.33■□□□□ 0.53
RFC3P40938 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFC3P40938 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFC3P40938 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.33■□□□□ 0.53
RFC3P40938 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFC3P40938 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.33■□□□□ 0.52
RFC3P40938 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.33■□□□□ 0.52
RFC3P40938 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 MTDHP1-201ENST00000605323 784 ntBASIC18.33■□□□□ 0.52
RFC3P40938 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.33■□□□□ 0.52
RFC3P40938 AL391422.3-201ENST00000603791 2761 ntBASIC18.33■□□□□ 0.52
RFC3P40938 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
RFC3P40938 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFC3P40938 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFC3P40938 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.32■□□□□ 0.52
RFC3P40938 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.32■□□□□ 0.52
RFC3P40938 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RFC3P40938 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.32■□□□□ 0.52
RFC3P40938 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.32■□□□□ 0.52
RFC3P40938 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFC3P40938 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFC3P40938 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFC3P40938 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.32■□□□□ 0.52
RFC3P40938 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.32■□□□□ 0.52
RFC3P40938 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFC3P40938 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RFC3P40938 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RFC3P40938 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.31■□□□□ 0.52
RFC3P40938 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 AC239809.2-201ENST00000415381 517 ntBASIC18.31■□□□□ 0.52
RFC3P40938 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.31■□□□□ 0.52
RFC3P40938 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.31■□□□□ 0.52
RFC3P40938 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.31■□□□□ 0.52
RFC3P40938 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.31■□□□□ 0.52
RFC3P40938 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
RFC3P40938 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.31■□□□□ 0.52
RFC3P40938 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.31■□□□□ 0.52
RFC3P40938 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.31■□□□□ 0.52
RFC3P40938 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFC3P40938 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
RFC3P40938 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.3■□□□□ 0.52
RFC3P40938 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.3■□□□□ 0.52
RFC3P40938 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RFC3P40938 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
RFC3P40938 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.3■□□□□ 0.52
RFC3P40938 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RFC3P40938 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
RFC3P40938 KRASP1-201ENST00000407852 552 ntBASIC18.3■□□□□ 0.52
RFC3P40938 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC3P40938 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC3P40938 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFC3P40938 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms