Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 EAF1YDR359C 2949 nt1.21□□□□□ -2.22
SHP1P34223 STB6YKL072W 2301 nt1.2□□□□□ -2.22
SHP1P34223 PAU12YGR294W 363 nt1.2□□□□□ -2.22
SHP1P34223 ECM12YHR021W-A 456 nt1.2□□□□□ -2.22
SHP1P34223 RRT15YLR162W-A 189 nt1.2□□□□□ -2.22
SHP1P34223 PAU24YBR301W 363 nt1.2□□□□□ -2.22
SHP1P34223 YBR200W-AYBR200W-A 165 nt1.19□□□□□ -2.22
SHP1P34223 snR49snR49 165 nt1.18□□□□□ -2.22
SHP1P34223 WAR1YML076C 2835 nt1.18□□□□□ -2.22
SHP1P34223 ROM2YLR371W 4071 nt1.17□□□□□ -2.22
SHP1P34223 YPR092WYPR092W 306 nt1.17□□□□□ -2.22
SHP1P34223 MYO1YHR023W 5787 nt1.17□□□□□ -2.22
SHP1P34223 MCM10YIL150C 1716 nt1.17□□□□□ -2.22
SHP1P34223 OLI1Q0130 231 nt1.16□□□□□ -2.22
SHP1P34223 SGF11YPL047W 300 nt1.16□□□□□ -2.22
SHP1P34223 RSM22YKL155C 1887 nt1.16□□□□□ -2.22
SHP1P34223 YNL284C-BYNL284C-B 5268 nt1.15□□□□□ -2.22
SHP1P34223 BEM2YER155C 6504 nt1.14□□□□□ -2.23
SHP1P34223 snR74snR74 88 nt1.14□□□□□ -2.23
SHP1P34223 snR8snR8 190 nt1.14□□□□□ -2.23
SHP1P34223 YIL020C-AYIL020C-A 339 nt1.14□□□□□ -2.23
SHP1P34223 GEA2YEL022W 4380 nt1.14□□□□□ -2.23
SHP1P34223 SEC3YER008C 4011 nt1.13□□□□□ -2.23
SHP1P34223 NUP157YER105C 4176 nt1.13□□□□□ -2.23
SHP1P34223 SMC1YFL008W 3678 nt1.12□□□□□ -2.23
SHP1P34223 YGL188C-AYGL188C-A 141 nt1.12□□□□□ -2.23
SHP1P34223 YMR307C-AYMR307C-A 195 nt1.12□□□□□ -2.23
SHP1P34223 NST1YNL091W 3723 nt1.12□□□□□ -2.23
SHP1P34223 RAD9YDR217C 3930 nt1.12□□□□□ -2.23
SHP1P34223 YDR354C-AYDR354C-A 144 nt1.11□□□□□ -2.23
SHP1P34223 YGL041CYGL041C 204 nt1.11□□□□□ -2.23
SHP1P34223 QCR9YGR183C 201 nt1.11□□□□□ -2.23
SHP1P34223 YNL211CYNL211C 261 nt1.11□□□□□ -2.23
SHP1P34223 snR55snR55 98 nt1.1□□□□□ -2.23
SHP1P34223 PAM16YJL104W 450 nt1.1□□□□□ -2.23
SHP1P34223 YLL019W-AYLL019W-A 93 nt1.1□□□□□ -2.23
SHP1P34223 YOL155W-AYOL155W-A 135 nt1.1□□□□□ -2.23
SHP1P34223 tF(GAA)QtF(GAA)Q 75 nt1.09□□□□□ -2.23
SHP1P34223 ABF2YMR072W 552 nt1.09□□□□□ -2.23
SHP1P34223 YOR072W-BYOR072W-B 162 nt1.09□□□□□ -2.23
SHP1P34223 VAM6YDL077C 3150 nt1.08□□□□□ -2.24
SHP1P34223 YJL026C-AYJL026C-A 222 nt1.08□□□□□ -2.24
SHP1P34223 CMC4YMR194C-B 222 nt1.08□□□□□ -2.24
SHP1P34223 NOP9YJL010C 2001 nt1.08□□□□□ -2.24
SHP1P34223 CLU1YMR012W 3834 nt1.08□□□□□ -2.24
SHP1P34223 SPT7YBR081C 3999 nt1.07□□□□□ -2.24
SHP1P34223 snR80snR80 171 nt1.07□□□□□ -2.24
SHP1P34223 YDR366CYDR366C 399 nt1.07□□□□□ -2.24
SHP1P34223 NPR2YEL062W 1848 nt1.07□□□□□ -2.24
SHP1P34223 YPL044CYPL044C 549 nt1.06□□□□□ -2.24
SHP1P34223 PAA1YDR071C 576 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)BtF(GAA)B 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)FtF(GAA)F 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)GtF(GAA)G 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)H1tF(GAA)H1 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)H2tF(GAA)H2 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)MtF(GAA)M 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)P1tF(GAA)P1 73 nt1.05□□□□□ -2.24
SHP1P34223 tF(GAA)P2tF(GAA)P2 73 nt1.05□□□□□ -2.24
SHP1P34223 YAL067W-AYAL067W-A 228 nt1.05□□□□□ -2.24
SHP1P34223 YJR029WYJR029W 5268 nt1.04□□□□□ -2.24
SHP1P34223 YPR137C-BYPR137C-B 5268 nt1.04□□□□□ -2.24
SHP1P34223 APL1YJR005W 2103 nt1.04□□□□□ -2.24
SHP1P34223 KAP120YPL125W 3099 nt1.04□□□□□ -2.24
SHP1P34223 YDL196WYDL196W 330 nt1.04□□□□□ -2.24
SHP1P34223 YIR030W-AYIR030W-A 384 nt1.04□□□□□ -2.24
SHP1P34223 YBR182C-AYBR182C-A 195 nt1.04□□□□□ -2.24
SHP1P34223 BUD3YCL014W 4911 nt1.04□□□□□ -2.24
SHP1P34223 DOP1YDR141C 5097 nt1.04□□□□□ -2.24
SHP1P34223 YFR012W-AYFR012W-A 87 nt1.03□□□□□ -2.24
SHP1P34223 SCC2YDR180W 4482 nt1.03□□□□□ -2.25
SHP1P34223 ASE1YOR058C 2658 nt1.02□□□□□ -2.25
SHP1P34223 YKU70YMR284W 1809 nt1.02□□□□□ -2.25
SHP1P34223 ISD11YER048W-A 285 nt1.01□□□□□ -2.25
SHP1P34223 YIL142C-AYIL142C-A 333 nt1.01□□□□□ -2.25
SHP1P34223 YDL185C-AYDL185C-A 228 nt1□□□□□ -2.25
SHP1P34223 RPL26BYGR034W 384 nt0.99□□□□□ -2.25
SHP1P34223 YOR302WYOR302W 78 nt0.99□□□□□ -2.25
SHP1P34223 BFR2YDR299W 1605 nt0.97□□□□□ -2.25
SHP1P34223 YCR018C-AYCR018C-A 255 nt0.96□□□□□ -2.26
SHP1P34223 PMP1YCR024C-A 123 nt0.96□□□□□ -2.26
SHP1P34223 EMT1tM(CAU)D 73 nt0.96□□□□□ -2.26
SHP1P34223 EMT5tM(CAU)J1 73 nt0.96□□□□□ -2.26
SHP1P34223 EMT3tM(CAU)J2 73 nt0.96□□□□□ -2.26
SHP1P34223 EMT4tM(CAU)M 73 nt0.96□□□□□ -2.26
SHP1P34223 EMT2tM(CAU)O2 73 nt0.96□□□□□ -2.26
SHP1P34223 YMR158W-BYMR158W-B 321 nt0.96□□□□□ -2.26
SHP1P34223 YPR117WYPR117W 7470 nt0.96□□□□□ -2.26
SHP1P34223 YOR345CYOR345C 351 nt0.95□□□□□ -2.26
SHP1P34223 COY1YKL179C 2040 nt0.94□□□□□ -2.26
SHP1P34223 YIL134C-AYIL134C-A 204 nt0.92□□□□□ -2.26
SHP1P34223 COX12YLR038C 252 nt0.92□□□□□ -2.26
SHP1P34223 YLR282CYLR282C 342 nt0.92□□□□□ -2.26
SHP1P34223 snR190snR190 190 nt0.92□□□□□ -2.26
SHP1P34223 YBR131C-AYBR131C-A 90 nt0.92□□□□□ -2.26
SHP1P34223 RKR1YMR247C 4689 nt0.92□□□□□ -2.26
SHP1P34223 PRP16YKR086W 3216 nt0.91□□□□□ -2.26
SHP1P34223 YDL073WYDL073W 2955 nt0.91□□□□□ -2.26
SHP1P34223 ULI1YFR026C 510 nt0.91□□□□□ -2.26
SHP1P34223 YGL123C-AYGL123C-A 231 nt0.91□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 32.4 ms