Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC25.46■■□□□ 1.67
COL5A3P25940 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
COL5A3P25940 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC25.46■■□□□ 1.67
COL5A3P25940 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC25.46■■□□□ 1.67
COL5A3P25940 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC25.46■■□□□ 1.67
COL5A3P25940 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC25.46■■□□□ 1.67
COL5A3P25940 AP005242.2-201ENST00000580065 1175 ntBASIC25.46■■□□□ 1.67
COL5A3P25940 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.46■■□□□ 1.67
COL5A3P25940 AL445675.2-201ENST00000620291 557 ntBASIC25.46■■□□□ 1.67
COL5A3P25940 MYC-208ENST00000641036 567 ntBASIC25.46■■□□□ 1.67
COL5A3P25940 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.67
COL5A3P25940 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.67
COL5A3P25940 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
COL5A3P25940 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
COL5A3P25940 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
COL5A3P25940 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.45■■□□□ 1.66
COL5A3P25940 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.45■■□□□ 1.66
COL5A3P25940 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.45■■□□□ 1.66
COL5A3P25940 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.45■■□□□ 1.66
COL5A3P25940 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
COL5A3P25940 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.45■■□□□ 1.66
COL5A3P25940 AL024507.2-201ENST00000606070 2574 ntBASIC25.45■■□□□ 1.66
COL5A3P25940 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
COL5A3P25940 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
COL5A3P25940 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
COL5A3P25940 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
COL5A3P25940 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC25.44■■□□□ 1.66
COL5A3P25940 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
COL5A3P25940 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC25.44■■□□□ 1.66
COL5A3P25940 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.44■■□□□ 1.66
COL5A3P25940 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC25.44■■□□□ 1.66
COL5A3P25940 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.44■■□□□ 1.66
COL5A3P25940 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 AC104076.2-201ENST00000448912 469 ntBASIC25.43■■□□□ 1.66
COL5A3P25940 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC25.43■■□□□ 1.66
COL5A3P25940 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC25.43■■□□□ 1.66
COL5A3P25940 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.43■■□□□ 1.66
COL5A3P25940 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL5A3P25940 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.43■■□□□ 1.66
COL5A3P25940 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
COL5A3P25940 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.42■■□□□ 1.66
COL5A3P25940 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
COL5A3P25940 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
COL5A3P25940 ECEL1P2-202ENST00000465689 757 ntBASIC25.42■■□□□ 1.66
COL5A3P25940 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC25.42■■□□□ 1.66
COL5A3P25940 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
COL5A3P25940 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
COL5A3P25940 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC25.42■■□□□ 1.66
COL5A3P25940 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC25.42■■□□□ 1.66
COL5A3P25940 FSCN1P1-201ENST00000568912 1481 ntBASIC25.42■■□□□ 1.66
COL5A3P25940 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 HLA-G-202ENST00000376815 851 ntBASIC25.41■■□□□ 1.66
COL5A3P25940 HLA-G-203ENST00000376818 1127 ntBASIC25.41■■□□□ 1.66
COL5A3P25940 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 AL137013.1-201ENST00000432946 1228 ntBASIC25.41■■□□□ 1.66
COL5A3P25940 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.41■■□□□ 1.66
COL5A3P25940 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.41■■□□□ 1.66
COL5A3P25940 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 AL049796.1-201ENST00000565336 1766 ntBASIC25.41■■□□□ 1.66
COL5A3P25940 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
COL5A3P25940 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.4■■□□□ 1.66
COL5A3P25940 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL5A3P25940 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
COL5A3P25940 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL5A3P25940 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL5A3P25940 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.4■■□□□ 1.66
COL5A3P25940 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC25.4■■□□□ 1.66
COL5A3P25940 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL5A3P25940 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL5A3P25940 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
COL5A3P25940 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC25.4■■□□□ 1.66
COL5A3P25940 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.4■■□□□ 1.66
COL5A3P25940 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms