Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 LHS1YKL073W 2646 nt2.16□□□□□ -2.06
MSH3P25336 YMR247W-AYMR247W-A 144 nt2.15□□□□□ -2.07
MSH3P25336 YMR326CYMR326C 309 nt2.15□□□□□ -2.07
MSH3P25336 NUT1YGL151W 3399 nt2.15□□□□□ -2.07
MSH3P25336 TFB5YDR079C-A 219 nt2.14□□□□□ -2.07
MSH3P25336 YAL067W-AYAL067W-A 228 nt2.14□□□□□ -2.07
MSH3P25336 YBR099CYBR099C 384 nt2.14□□□□□ -2.07
MSH3P25336 ATG9YDL149W 2994 nt2.14□□□□□ -2.07
MSH3P25336 YJR039WYJR039W 3366 nt2.13□□□□□ -2.07
MSH3P25336 FKS1YLR342W 5631 nt2.12□□□□□ -2.07
MSH3P25336 YER172C-AYER172C-A 381 nt2.12□□□□□ -2.07
MSH3P25336 FAB1YFR019W 6837 nt2.12□□□□□ -2.07
MSH3P25336 GYP5YPL249C 2685 nt2.12□□□□□ -2.07
MSH3P25336 YLL054CYLL054C 2532 nt2.11□□□□□ -2.07
MSH3P25336 YCR095W-AYCR095W-A 159 nt2.11□□□□□ -2.07
MSH3P25336 PDR8YLR266C 2106 nt2.11□□□□□ -2.07
MSH3P25336 UFD2YDL190C 2886 nt2.1□□□□□ -2.07
MSH3P25336 ALY2YJL084C 3141 nt2.1□□□□□ -2.07
MSH3P25336 SEC31YDL195W 3822 nt2.1□□□□□ -2.07
MSH3P25336 OST4YDL232W 111 nt2.1□□□□□ -2.07
MSH3P25336 CMC4YMR194C-B 222 nt2.1□□□□□ -2.07
MSH3P25336 POL5YEL055C 3069 nt2.09□□□□□ -2.07
MSH3P25336 PAN2YGL094C 3348 nt2.09□□□□□ -2.07
MSH3P25336 CHS6YJL099W 2241 nt2.09□□□□□ -2.07
MSH3P25336 PMP2YEL017C-A 132 nt2.09□□□□□ -2.07
MSH3P25336 EMC5YIL027C 426 nt2.09□□□□□ -2.07
MSH3P25336 MDS3YGL197W 4464 nt2.09□□□□□ -2.08
MSH3P25336 YLR282CYLR282C 342 nt2.08□□□□□ -2.08
MSH3P25336 MYO4YAL029C 4416 nt2.08□□□□□ -2.08
MSH3P25336 UTP8YGR128C 2142 nt2.08□□□□□ -2.08
MSH3P25336 YGL123C-AYGL123C-A 231 nt2.07□□□□□ -2.08
MSH3P25336 YGL182CYGL182C 324 nt2.07□□□□□ -2.08
MSH3P25336 tT(UGU)HtT(UGU)H 72 nt2.07□□□□□ -2.08
MSH3P25336 TMA7YLR262C-A 195 nt2.07□□□□□ -2.08
MSH3P25336 RSM22YKL155C 1887 nt2.07□□□□□ -2.08
MSH3P25336 RAD50YNL250W 3939 nt2.06□□□□□ -2.08
MSH3P25336 HSL1YKL101W 4557 nt2.06□□□□□ -2.08
MSH3P25336 YKL100W-AYKL100W-A 90 nt2.06□□□□□ -2.08
MSH3P25336 YNL103W-AYNL103W-A 90 nt2.06□□□□□ -2.08
MSH3P25336 MGA2YIR033W 3342 nt2.06□□□□□ -2.08
MSH3P25336 YHR214C-BYHR214C-B 5382 nt2.06□□□□□ -2.08
MSH3P25336 MMS4YBR098W 2076 nt2.06□□□□□ -2.08
MSH3P25336 YLL020CYLL020C 306 nt2.05□□□□□ -2.08
MSH3P25336 BFR2YDR299W 1605 nt2.04□□□□□ -2.08
MSH3P25336 YHR217CYHR217C 462 nt2.04□□□□□ -2.08
MSH3P25336 KIP1YBL063W 3336 nt2.04□□□□□ -2.08
MSH3P25336 COA6YMR244C-A 315 nt2.03□□□□□ -2.08
MSH3P25336 TBS1YBR150C 3285 nt2.03□□□□□ -2.08
MSH3P25336 YMR045CYMR045C 5268 nt2.02□□□□□ -2.09
MSH3P25336 SOM1YEL059C-A 225 nt2.02□□□□□ -2.09
MSH3P25336 SAC3YDR159W 3906 nt2.02□□□□□ -2.09
MSH3P25336 snR61snR61 90 nt2.01□□□□□ -2.09
MSH3P25336 COX5BYIL111W 456 nt2.01□□□□□ -2.09
MSH3P25336 YMR272W-BYMR272W-B 108 nt2□□□□□ -2.09
MSH3P25336 YAR009CYAR009C 3591 nt1.99□□□□□ -2.09
MSH3P25336 UBR2YLR024C 5619 nt1.99□□□□□ -2.09
MSH3P25336 SMC1YFL008W 3678 nt1.98□□□□□ -2.09
MSH3P25336 SLX4YLR135W 2247 nt1.98□□□□□ -2.09
MSH3P25336 YCS4YLR272C 3531 nt1.98□□□□□ -2.09
MSH3P25336 YBL039C-AYBL039C-A 84 nt1.98□□□□□ -2.09
MSH3P25336 YNL067W-BYNL067W-B 141 nt1.98□□□□□ -2.09
MSH3P25336 YOR161W-AYOR161W-A 81 nt1.98□□□□□ -2.09
MSH3P25336 SKI3YPR189W 4299 nt1.97□□□□□ -2.09
MSH3P25336 STB6YKL072W 2301 nt1.97□□□□□ -2.09
MSH3P25336 PEP1YBL017C 4740 nt1.96□□□□□ -2.1
MSH3P25336 RTP1YMR185W 2946 nt1.96□□□□□ -2.1
MSH3P25336 KCS1YDR017C 3153 nt1.95□□□□□ -2.1
MSH3P25336 MYO2YOR326W 4725 nt1.95□□□□□ -2.1
MSH3P25336 SBH1YER087C-B 249 nt1.95□□□□□ -2.1
MSH3P25336 STF2YGR008C 255 nt1.95□□□□□ -2.1
MSH3P25336 YLR422WYLR422W 5799 nt1.95□□□□□ -2.1
MSH3P25336 YDL247W-AYDL247W-A 75 nt1.94□□□□□ -2.1
MSH3P25336 QCR9YGR183C 201 nt1.94□□□□□ -2.1
MSH3P25336 EAF1YDR359C 2949 nt1.94□□□□□ -2.1
MSH3P25336 TAH1YCR060W 336 nt1.93□□□□□ -2.1
MSH3P25336 snR14snR14 160 nt1.93□□□□□ -2.1
MSH3P25336 SMC4YLR086W 4257 nt1.93□□□□□ -2.1
MSH3P25336 YML002WYML002W 2214 nt1.93□□□□□ -2.1
MSH3P25336 PKH3YDR466W 2697 nt1.89□□□□□ -2.11
MSH3P25336 KAP122YGL016W 3246 nt1.89□□□□□ -2.11
MSH3P25336 NOP9YJL010C 2001 nt1.88□□□□□ -2.11
MSH3P25336 snR39BsnR39B 96 nt1.87□□□□□ -2.11
MSH3P25336 STO1YMR125W 2586 nt1.86□□□□□ -2.11
MSH3P25336 YHR131W-AYHR131W-A 246 nt1.86□□□□□ -2.11
MSH3P25336 YLR041WYLR041W 321 nt1.86□□□□□ -2.11
MSH3P25336 YOR093CYOR093C 4947 nt1.86□□□□□ -2.11
MSH3P25336 tM(CAU)Q2tM(CAU)Q2 78 nt1.85□□□□□ -2.11
MSH3P25336 SET3YKR029C 2256 nt1.85□□□□□ -2.11
MSH3P25336 ROM2YLR371W 4071 nt1.85□□□□□ -2.11
MSH3P25336 YLR419WYLR419W 4308 nt1.85□□□□□ -2.11
MSH3P25336 DNF3YMR162C 4971 nt1.85□□□□□ -2.11
MSH3P25336 IRC20YLR247C 4671 nt1.84□□□□□ -2.11
MSH3P25336 SEC21YNL287W 2808 nt1.84□□□□□ -2.12
MSH3P25336 CDC25YLR310C 4770 nt1.83□□□□□ -2.12
MSH3P25336 WAR1YML076C 2835 nt1.83□□□□□ -2.12
MSH3P25336 VPS15YBR097W 4365 nt1.82□□□□□ -2.12
MSH3P25336 FYV10YIL097W 1551 nt1.82□□□□□ -2.12
MSH3P25336 YGL041C-BYGL041C-B 183 nt1.82□□□□□ -2.12
MSH3P25336 IRA1YBR140C 9279 nt1.81□□□□□ -2.12
MSH3P25336 PIK1YNL267W 3201 nt1.81□□□□□ -2.12
Retrieved 100 of 7,029 protein–RNA pairs in 69.6 ms