Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.14■□□□□ 0.97
BDNFP23560 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.14■□□□□ 0.97
BDNFP23560 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.14■□□□□ 0.97
BDNFP23560 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BDNFP23560 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
BDNFP23560 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.13■□□□□ 0.97
BDNFP23560 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
BDNFP23560 AC093827.2-201ENST00000512654 315 ntBASIC21.13■□□□□ 0.97
BDNFP23560 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.13■□□□□ 0.97
BDNFP23560 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.13■□□□□ 0.97
BDNFP23560 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
BDNFP23560 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.13■□□□□ 0.97
BDNFP23560 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.13■□□□□ 0.97
BDNFP23560 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BDNFP23560 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
BDNFP23560 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.12■□□□□ 0.97
BDNFP23560 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.12■□□□□ 0.97
BDNFP23560 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.12■□□□□ 0.97
BDNFP23560 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.12■□□□□ 0.97
BDNFP23560 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.12■□□□□ 0.97
BDNFP23560 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.12■□□□□ 0.97
BDNFP23560 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
BDNFP23560 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.12■□□□□ 0.97
BDNFP23560 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.12■□□□□ 0.97
BDNFP23560 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BDNFP23560 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 AC073314.1-201ENST00000568729 2216 ntBASIC21.11■□□□□ 0.97
BDNFP23560 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.11■□□□□ 0.97
BDNFP23560 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.11■□□□□ 0.97
BDNFP23560 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.11■□□□□ 0.97
BDNFP23560 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
BDNFP23560 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BDNFP23560 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.1■□□□□ 0.97
BDNFP23560 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
BDNFP23560 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
BDNFP23560 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 AC239809.2-201ENST00000415381 517 ntBASIC21.1■□□□□ 0.97
BDNFP23560 UBE2SP1-201ENST00000450587 669 ntBASIC21.1■□□□□ 0.97
BDNFP23560 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.1■□□□□ 0.97
BDNFP23560 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 AC124016.1-201ENST00000609552 612 ntBASIC21.1■□□□□ 0.97
BDNFP23560 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 AP006294.2-201ENST00000641667 209 ntBASIC21.1■□□□□ 0.97
BDNFP23560 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
BDNFP23560 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BDNFP23560 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
BDNFP23560 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms