Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 AC125437.2-201ENST00000625180 2167 ntBASIC22.01■■□□□ 1.11
TPM1P09493 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
TPM1P09493 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
TPM1P09493 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 KRT8P36-201ENST00000489121 1440 ntBASIC22.01■■□□□ 1.11
TPM1P09493 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
TPM1P09493 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.01■■□□□ 1.11
TPM1P09493 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.01■■□□□ 1.11
TPM1P09493 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.01■■□□□ 1.11
TPM1P09493 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.01■■□□□ 1.11
TPM1P09493 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
TPM1P09493 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 FAM21FP-204ENST00000608637 956 ntBASIC22■■□□□ 1.11
TPM1P09493 MIR6084-201ENST00000622012 110 ntBASIC22■■□□□ 1.11
TPM1P09493 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
TPM1P09493 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
TPM1P09493 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TPM1P09493 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.99■■□□□ 1.11
TPM1P09493 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.99■■□□□ 1.11
TPM1P09493 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.99■■□□□ 1.11
TPM1P09493 AC007322.3-201ENST00000426526 701 ntBASIC21.99■■□□□ 1.11
TPM1P09493 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.99■■□□□ 1.11
TPM1P09493 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TPM1P09493 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TPM1P09493 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.98■■□□□ 1.11
TPM1P09493 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.98■■□□□ 1.11
TPM1P09493 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TPM1P09493 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
TPM1P09493 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 TNXA-203ENST00000507684 2038 ntBASIC21.97■■□□□ 1.11
TPM1P09493 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.97■■□□□ 1.11
TPM1P09493 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.97■■□□□ 1.11
TPM1P09493 IRS3P-201ENST00000223076 1006 ntBASIC21.97■■□□□ 1.11
TPM1P09493 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.97■■□□□ 1.11
TPM1P09493 SLC7A5P2-201ENST00000553010 536 ntBASIC21.97■■□□□ 1.11
TPM1P09493 AC110285.6-201ENST00000617652 491 ntBASIC21.97■■□□□ 1.11
TPM1P09493 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.97■■□□□ 1.11
TPM1P09493 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
TPM1P09493 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TPM1P09493 BCL2-203ENST00000589955 5011 ntBASIC21.97■■□□□ 1.11
TPM1P09493 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TPM1P09493 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms