Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.61■□□□□ 0.25
CTSDP07339 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CTSDP07339 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CTSDP07339 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CTSDP07339 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CTSDP07339 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CTSDP07339 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.6■□□□□ 0.25
CTSDP07339 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 FAM21FP-204ENST00000608637 956 ntBASIC16.6■□□□□ 0.25
CTSDP07339 AC110285.6-201ENST00000617652 491 ntBASIC16.6■□□□□ 0.25
CTSDP07339 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CTSDP07339 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.6■□□□□ 0.25
CTSDP07339 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CTSDP07339 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CTSDP07339 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.59■□□□□ 0.25
CTSDP07339 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 AC093503.3-201ENST00000624917 2352 ntBASIC16.59■□□□□ 0.25
CTSDP07339 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.59■□□□□ 0.25
CTSDP07339 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CTSDP07339 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CTSDP07339 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC16.59■□□□□ 0.25
CTSDP07339 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC16.59■□□□□ 0.25
CTSDP07339 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.59■□□□□ 0.25
CTSDP07339 AC010141.2-201ENST00000452426 721 ntBASIC16.59■□□□□ 0.25
CTSDP07339 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
CTSDP07339 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.59■□□□□ 0.25
CTSDP07339 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CTSDP07339 AL358852.1-201ENST00000623174 1268 ntBASIC16.59■□□□□ 0.25
CTSDP07339 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.59■□□□□ 0.25
CTSDP07339 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CTSDP07339 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CTSDP07339 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.58■□□□□ 0.25
CTSDP07339 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CTSDP07339 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.58■□□□□ 0.25
CTSDP07339 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.58■□□□□ 0.25
CTSDP07339 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
CTSDP07339 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CTSDP07339 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CTSDP07339 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC16.58■□□□□ 0.24
CTSDP07339 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.58■□□□□ 0.24
CTSDP07339 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.58■□□□□ 0.24
CTSDP07339 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CTSDP07339 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC16.58■□□□□ 0.24
CTSDP07339 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.58■□□□□ 0.24
CTSDP07339 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.58■□□□□ 0.24
CTSDP07339 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.58■□□□□ 0.24
CTSDP07339 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.58■□□□□ 0.24
CTSDP07339 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CTSDP07339 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTSDP07339 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTSDP07339 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
CTSDP07339 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTSDP07339 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTSDP07339 AC009237.14-201ENST00000609975 1594 ntBASIC16.57■□□□□ 0.24
CTSDP07339 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.57■□□□□ 0.24
CTSDP07339 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.57■□□□□ 0.24
CTSDP07339 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CTSDP07339 AC007322.3-201ENST00000426526 701 ntBASIC16.57■□□□□ 0.24
CTSDP07339 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms