Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.78■□□□□ 0.28
ABCA1O95477 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ABCA1O95477 ARMC10P1-201ENST00000313754 855 ntBASIC16.78■□□□□ 0.28
ABCA1O95477 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.78■□□□□ 0.28
ABCA1O95477 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.78■□□□□ 0.28
ABCA1O95477 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA1O95477 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.77■□□□□ 0.28
ABCA1O95477 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA1O95477 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA1O95477 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA1O95477 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA1O95477 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA1O95477 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA1O95477 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA1O95477 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA1O95477 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA1O95477 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.77■□□□□ 0.27
ABCA1O95477 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
ABCA1O95477 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA1O95477 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA1O95477 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA1O95477 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.76■□□□□ 0.27
ABCA1O95477 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.76■□□□□ 0.27
ABCA1O95477 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 MIR6786-201ENST00000616843 113 ntBASIC16.76■□□□□ 0.27
ABCA1O95477 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ABCA1O95477 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.76■□□□□ 0.27
ABCA1O95477 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.76■□□□□ 0.27
ABCA1O95477 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.76■□□□□ 0.27
ABCA1O95477 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.76■□□□□ 0.27
ABCA1O95477 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA1O95477 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
ABCA1O95477 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.76■□□□□ 0.27
ABCA1O95477 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.75■□□□□ 0.27
ABCA1O95477 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
ABCA1O95477 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.75■□□□□ 0.27
ABCA1O95477 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ABCA1O95477 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.75■□□□□ 0.27
ABCA1O95477 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
ABCA1O95477 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC113347.1-201ENST00000413321 391 ntBASIC16.75■□□□□ 0.27
ABCA1O95477 PGM5P4-201ENST00000421970 445 ntBASIC16.75■□□□□ 0.27
ABCA1O95477 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.75■□□□□ 0.27
ABCA1O95477 AC006557.6-201ENST00000623071 864 ntBASIC16.75■□□□□ 0.27
ABCA1O95477 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA1O95477 AC005229.4-201ENST00000610085 2198 ntBASIC16.75■□□□□ 0.27
ABCA1O95477 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA1O95477 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms