Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.58■□□□□ 0.4
LMX1BO60663 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.58■□□□□ 0.4
LMX1BO60663 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.58■□□□□ 0.4
LMX1BO60663 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.58■□□□□ 0.4
LMX1BO60663 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LMX1BO60663 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.58■□□□□ 0.4
LMX1BO60663 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
LMX1BO60663 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 KRT8P36-201ENST00000489121 1440 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LMX1BO60663 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1BO60663 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1BO60663 AC007322.3-201ENST00000426526 701 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
LMX1BO60663 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1BO60663 RNA5SP413-201ENST00000516373 109 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 AC098934.4-201ENST00000564127 592 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 AC008687.6-201ENST00000596318 630 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 AC243732.1-201ENST00000612648 864 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1BO60663 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.57■□□□□ 0.4
LMX1BO60663 AL158211.5-201ENST00000623583 2518 ntBASIC17.57■□□□□ 0.4
LMX1BO60663 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1BO60663 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.57■□□□□ 0.4
LMX1BO60663 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 TERF1P5-201ENST00000477545 1207 ntBASIC17.56■□□□□ 0.4
LMX1BO60663 ITM2C-210ENST00000620962 501 ntBASIC17.56■□□□□ 0.4
LMX1BO60663 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LMX1BO60663 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LMX1BO60663 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1BO60663 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1BO60663 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
LMX1BO60663 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1BO60663 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LMX1BO60663 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 SLC7A5P1-201ENST00000568957 537 ntBASIC17.55■□□□□ 0.4
LMX1BO60663 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1BO60663 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 AC008694.1-202ENST00000636953 945 ntBASIC17.55■□□□□ 0.4
LMX1BO60663 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.55■□□□□ 0.4
LMX1BO60663 MKRN4P-201ENST00000444706 1521 ntBASIC17.55■□□□□ 0.4
LMX1BO60663 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LMX1BO60663 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1BO60663 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.55■□□□□ 0.4
LMX1BO60663 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms