Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 AL596275.1-201ENST00000423464 877 ntBASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPIPA2E9PIF3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 AC005829.2-201ENST00000571422 1056 ntBASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPIPA2E9PIF3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 MIR2861-201ENST00000636310 90 ntBASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPIPA2E9PIF3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 AC120498.8-201ENST00000614275 531 ntBASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPIPA2E9PIF3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPIPA2E9PIF3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms