Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMIM28A0A1B0GU29 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 SMG8-203ENST00000578922 2178 ntBASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 AL121906.2-201ENST00000621597 723 ntBASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.53■■□□□ 1.04
SMIM28A0A1B0GU29 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMIM28A0A1B0GU29 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMIM28A0A1B0GU29 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMIM28A0A1B0GU29 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMIM28A0A1B0GU29 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 MIR718-201ENST00000390190 70 ntBASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMIM28A0A1B0GU29 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMIM28A0A1B0GU29 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms