Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CPB1-201ENST00000282957 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 PRAC1-201ENST00000290294 386 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 LEMD1-202ENST00000367151 869 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 LEMD1-204ENST00000367153 929 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 ST3GAL3-213ENST00000372365 673 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 LEMD1-206ENST00000391936 727 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 TMEM213-201ENST00000397602 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 OR4F7P-201ENST00000402444 931 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 OR4F1P-201ENST00000405102 938 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 OR4F2P-201ENST00000424047 938 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AL121917.1-202ENST00000424434 367 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 RPE-205ENST00000429907 925 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 EMC3-AS1-204ENST00000430621 683 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC099344.1-201ENST00000433548 492 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AL353653.1-202ENST00000435177 539 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CHIAP1-201ENST00000456220 995 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 ASPA-202ENST00000456349 1090 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC011726.3-201ENST00000518031 568 ntTSL 4 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 SNX18P27-201ENST00000523611 779 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC244502.1-205ENST00000535351 571 ntTSL 4 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 NDFIP1P1-201ENST00000543144 525 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AL356800.1-201ENST00000553339 735 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 APEX1-214ENST00000557054 888 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC103740.1-204ENST00000557994 570 ntTSL 4 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 RN7SL311P-201ENST00000579858 306 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC093074.1-201ENST00000590280 556 ntTSL 4 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC073911.1-201ENST00000592296 504 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 FARSA-AS1-201ENST00000592636 241 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 U47924.1-201ENST00000606539 434 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 Metazoa_SRP.124-201ENST00000610352 345 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 Metazoa_SRP.123-201ENST00000616695 286 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AP000851.2-201ENST00000629499 721 ntTSL 3 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 OR4C1P-202ENST00000641065 1569 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 AC089998.1-201ENST00000548575 3141 ntBASIC6.42□□□□□ -1.38
NKX3-1Q99801 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX3-1Q99801 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX3-1Q99801 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 MAPK10-383ENST00000642032 3390 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 RNU1-21P-201ENST00000363327 163 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 COQ3-202ENST00000369240 646 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 NUS1P4-201ENST00000401550 585 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 KRT18P52-201ENST00000404956 846 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 LINC00159-202ENST00000414877 428 ntTSL 4 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AKR1B15-201ENST00000423958 1035 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC130472.1-201ENST00000427885 309 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 AL021707.2-201ENST00000431924 786 ntTSL 3 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 PRSS48-201ENST00000441586 560 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms