Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 ZSCAN9-204ENST00000527436 2062 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 FGL1-202ENST00000381841 1374 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 GPR155-203ENST00000392552 6730 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 PMS2CL-204ENST00000486256 3327 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 FOLH1B-201ENST00000525540 1974 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 CLDN16-201ENST00000264734 3273 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 MEF2C-239ENST00000636294 2576 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AC010320.4-201ENST00000594379 1905 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 RAB19-201ENST00000356407 822 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 PAGE5-202ENST00000374952 428 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 IL36G-202ENST00000376489 989 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 XGY1-201ENST00000381172 446 ntBASIC8.14□□□□□ -1.11
MSX1P28360 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AL050335.1-201ENST00000396909 869 ntBASIC8.14□□□□□ -1.11
MSX1P28360 CXADRP1-201ENST00000398098 1095 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC8.14□□□□□ -1.11
MSX1P28360 RPS7P9-201ENST00000414704 586 ntBASIC8.14□□□□□ -1.11
MSX1P28360 CNOT4P1-201ENST00000417432 1199 ntBASIC8.14□□□□□ -1.11
MSX1P28360 IPPKP1-201ENST00000422501 768 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 VN1R35P-201ENST00000428102 693 ntBASIC8.14□□□□□ -1.11
MSX1P28360 SNX18P2-201ENST00000438540 808 ntBASIC8.14□□□□□ -1.11
MSX1P28360 LINC01713-201ENST00000445589 932 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 AL606662.1-201ENST00000445763 553 ntBASIC8.14□□□□□ -1.11
MSX1P28360 TPT1P14-201ENST00000448018 505 ntBASIC8.14□□□□□ -1.11
MSX1P28360 DLG5-AS1-201ENST00000449852 487 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AC093392.2-201ENST00000450682 337 ntBASIC8.14□□□□□ -1.11
MSX1P28360 RPS2P25-201ENST00000467247 580 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC119424.1-201ENST00000472513 350 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 AC009269.1-203ENST00000496414 828 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 NR1I3-219ENST00000504010 944 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AC026787.1-201ENST00000504182 420 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AC091951.4-201ENST00000512746 332 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 AL158819.1-201ENST00000514681 398 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AC084251.1-201ENST00000521867 382 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 OR5BC1P-201ENST00000529327 739 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AP001317.1-201ENST00000531194 960 ntBASIC8.14□□□□□ -1.11
MSX1P28360 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 RAB19-203ENST00000537763 952 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 LRTOMT-216ENST00000539271 570 ntTSL 4 BASIC8.14□□□□□ -1.11
MSX1P28360 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AC060814.2-201ENST00000556905 1089 ntBASIC8.14□□□□□ -1.11
MSX1P28360 EIF4EBP1P1-201ENST00000557776 341 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC084757.1-201ENST00000559987 490 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC010536.2-201ENST00000563036 338 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 CASC16-202ENST00000563844 610 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 LINC00556-201ENST00000569603 412 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 AP005262.1-201ENST00000582646 997 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 AC011442.1-201ENST00000587831 366 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AC020907.2-202ENST00000592174 728 ntTSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 TEX41-218ENST00000596540 882 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 INTS6-AS1-218ENST00000598905 906 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AL158211.4-201ENST00000606988 584 ntBASIC8.14□□□□□ -1.11
MSX1P28360 AC013476.2-201ENST00000614456 459 ntBASIC8.14□□□□□ -1.11
MSX1P28360 PCAT14-203ENST00000629869 976 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 LINC01808-202ENST00000641680 1116 ntBASIC8.14□□□□□ -1.11
MSX1P28360 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 NVL-216ENST00000482491 3003 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 TDP1-202ENST00000393452 2370 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 INTS6-215ENST00000490542 2307 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 UCA1-201ENST00000397381 2299 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 CREM-204ENST00000345491 2220 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 ASXL2-202ENST00000404843 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AC092447.7-201ENST00000422212 1621 ntBASIC8.14□□□□□ -1.11
MSX1P28360 OR4C1P-202ENST00000641065 1569 ntBASIC8.14□□□□□ -1.11
MSX1P28360 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 CCR9-203ENST00000395963 2512 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 AC138207.6-201ENST00000579164 1967 ntBASIC8.13□□□□□ -1.11
MSX1P28360 MARCH1-214ENST00000514618 3903 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 AC008739.5-201ENST00000623035 1938 ntBASIC8.13□□□□□ -1.11
MSX1P28360 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 ELAVL4-201ENST00000357083 1442 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 MAPK10-210ENST00000449047 2382 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 MSRB3-212ENST00000614640 4270 ntAPPRIS P1 TSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 HEPACAM2-204ENST00000453812 1869 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 ANKRD20A11P-206ENST00000451663 3717 ntBASIC8.13□□□□□ -1.11
MSX1P28360 BTN2A3P-201ENST00000377662 1836 ntBASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms