Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 NPIPA1-201ENST00000328085 1084 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AL157698.1-201ENST00000415190 1011 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AL354872.1-201ENST00000456361 967 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC040975.1-201ENST00000472104 316 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC114940.1-201ENST00000512162 1265 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC130366.1-201ENST00000526505 1192 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 AP003555.2-201ENST00000528507 655 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 LDHC-204ENST00000536880 957 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 CASC19-208ENST00000641056 1292 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 CASC19-227ENST00000641411 1285 ntBASIC8.65□□□□□ -1.02
HLA-DOAP06340 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC8.65□□□□□ -1.02
HLA-DOAP06340 ACVR1-201ENST00000263640 3047 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HLA-DOAP06340 MAPK10-347ENST00000641762 2856 ntBASIC8.65□□□□□ -1.03
HLA-DOAP06340 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC8.65□□□□□ -1.03
HLA-DOAP06340 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HLA-DOAP06340 LYRM1-204ENST00000439021 1558 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
HLA-DOAP06340 OR4D10-201ENST00000530162 2482 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC092999.1-201ENST00000624004 1924 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 CEACAM5-203ENST00000405816 2354 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 NRG3-206ENST00000545131 2713 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 PPIAP22-201ENST00000358455 498 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AL450313.1-201ENST00000366376 452 ntTSL 3 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AL451061.1-201ENST00000407887 862 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 EIF4A1P13-201ENST00000415667 230 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 RPL34P19-201ENST00000415903 342 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AL593856.1-201ENST00000419949 805 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AQP4-203ENST00000440832 1169 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 RN7SL149P-201ENST00000465197 281 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 RN7SL775P-201ENST00000498361 336 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 MTND6P16-201ENST00000504006 520 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 LDHBP3-201ENST00000514909 822 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 SCARNA18.2-201ENST00000516882 84 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 IGHVII-51-2-201ENST00000519778 259 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC122710.3-201ENST00000606566 541 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 AC016542.3-201ENST00000623520 619 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC8.64□□□□□ -1.03
HLA-DOAP06340 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 AL591848.3-201ENST00000570141 2968 ntBASIC8.64□□□□□ -1.03
HLA-DOAP06340 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HLA-DOAP06340 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 CXCR4-201ENST00000241393 1682 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 SNORA68-201ENST00000384437 133 ntBASIC8.63□□□□□ -1.03
HLA-DOAP06340 AC110015.1-201ENST00000423367 440 ntTSL 3 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 AC009237.4-201ENST00000441078 238 ntBASIC8.63□□□□□ -1.03
HLA-DOAP06340 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HLA-DOAP06340 SRP68P2-201ENST00000456184 254 ntBASIC8.63□□□□□ -1.03
HLA-DOAP06340 RNA5SP287-201ENST00000516358 103 ntBASIC8.63□□□□□ -1.03
HLA-DOAP06340 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 PHBP2-201ENST00000532859 806 ntBASIC8.63□□□□□ -1.03
HLA-DOAP06340 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
HLA-DOAP06340 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms