Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC7.78□□□□□ -1.16
APOEP02649 PPIAP30-201ENST00000415473 519 ntBASIC7.78□□□□□ -1.16
APOEP02649 AC231533.2-201ENST00000419045 978 ntBASIC7.78□□□□□ -1.16
APOEP02649 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 GAPDHP55-201ENST00000423136 803 ntBASIC7.78□□□□□ -1.16
APOEP02649 RPL6P2-201ENST00000425480 783 ntBASIC7.78□□□□□ -1.16
APOEP02649 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC7.78□□□□□ -1.16
APOEP02649 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC7.78□□□□□ -1.16
APOEP02649 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC7.78□□□□□ -1.16
APOEP02649 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC7.78□□□□□ -1.16
APOEP02649 RPL24P8-201ENST00000446071 474 ntBASIC7.78□□□□□ -1.16
APOEP02649 CDC42P2-201ENST00000448566 569 ntBASIC7.78□□□□□ -1.16
APOEP02649 AL583856.1-201ENST00000454078 1101 ntBASIC7.78□□□□□ -1.16
APOEP02649 AC096922.1-201ENST00000461635 651 ntBASIC7.78□□□□□ -1.16
APOEP02649 RN7SL153P-201ENST00000486501 292 ntBASIC7.78□□□□□ -1.16
APOEP02649 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 AF279873.3-204ENST00000523336 784 ntTSL 2 BASIC7.78□□□□□ -1.16
APOEP02649 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
APOEP02649 EIF4EBP2P2-201ENST00000563883 333 ntBASIC7.78□□□□□ -1.16
APOEP02649 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.78□□□□□ -1.16
APOEP02649 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC7.78□□□□□ -1.16
APOEP02649 RBM4-213ENST00000578778 582 ntTSL 4 BASIC7.78□□□□□ -1.16
APOEP02649 AL050343.1-203ENST00000586761 1290 ntTSL 3 BASIC7.78□□□□□ -1.16
APOEP02649 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
APOEP02649 AL390058.1-201ENST00000603834 629 ntBASIC7.78□□□□□ -1.16
APOEP02649 U47924.1-201ENST00000606539 434 ntBASIC7.78□□□□□ -1.16
APOEP02649 CASC19-208ENST00000641056 1292 ntBASIC7.78□□□□□ -1.16
APOEP02649 CASC19-227ENST00000641411 1285 ntBASIC7.78□□□□□ -1.16
APOEP02649 AC130456.1-201ENST00000565085 1363 ntBASIC7.78□□□□□ -1.16
APOEP02649 SOCS5P5-201ENST00000402732 1586 ntBASIC7.78□□□□□ -1.16
APOEP02649 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC7.78□□□□□ -1.16
APOEP02649 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.78□□□□□ -1.16
APOEP02649 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 AC090983.1-201ENST00000623426 3897 ntBASIC7.78□□□□□ -1.16
APOEP02649 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.78□□□□□ -1.16
APOEP02649 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
APOEP02649 GOT2P1-201ENST00000440922 1309 ntBASIC7.78□□□□□ -1.16
APOEP02649 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
APOEP02649 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.16
APOEP02649 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.16
APOEP02649 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
APOEP02649 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.16
APOEP02649 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
APOEP02649 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 OSGEPL1-204ENST00000519810 2216 ntTSL 2 BASIC7.77□□□□□ -1.17
APOEP02649 AC100810.3-201ENST00000633189 2240 ntBASIC7.77□□□□□ -1.17
APOEP02649 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.77□□□□□ -1.17
APOEP02649 AL078621.1-201ENST00000272567 768 ntBASIC7.77□□□□□ -1.17
APOEP02649 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
APOEP02649 SNORA73B-201ENST00000363217 204 ntBASIC7.77□□□□□ -1.17
APOEP02649 DPM1-201ENST00000371582 1161 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 RAC1P4-201ENST00000419413 579 ntBASIC7.77□□□□□ -1.17
APOEP02649 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC7.77□□□□□ -1.17
APOEP02649 AC008799.2-201ENST00000484429 647 ntBASIC7.77□□□□□ -1.17
APOEP02649 AC079944.1-201ENST00000485426 495 ntBASIC7.77□□□□□ -1.17
APOEP02649 RN7SL182P-201ENST00000496499 300 ntBASIC7.77□□□□□ -1.17
APOEP02649 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 RRM1-AS1-201ENST00000529323 346 ntTSL 5 BASIC7.77□□□□□ -1.17
APOEP02649 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC7.77□□□□□ -1.17
APOEP02649 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 AL356800.1-201ENST00000553339 735 ntBASIC7.77□□□□□ -1.17
APOEP02649 AL049869.4-201ENST00000555669 178 ntBASIC7.77□□□□□ -1.17
APOEP02649 IGHV1OR15-3-201ENST00000564926 351 ntBASIC7.77□□□□□ -1.17
APOEP02649 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC7.77□□□□□ -1.17
APOEP02649 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC7.77□□□□□ -1.17
APOEP02649 AC243830.2-201ENST00000618067 630 ntBASIC7.77□□□□□ -1.17
APOEP02649 KRTAP4-1-202ENST00000620667 737 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC7.77□□□□□ -1.17
APOEP02649 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
APOEP02649 AC110716.2-201ENST00000563865 3945 ntBASIC7.76□□□□□ -1.17
APOEP02649 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.76□□□□□ -1.17
APOEP02649 CD86-209ENST00000493101 1572 ntTSL 2 BASIC7.76□□□□□ -1.17
APOEP02649 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.76□□□□□ -1.17
APOEP02649 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.76□□□□□ -1.17
APOEP02649 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
APOEP02649 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
APOEP02649 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC7.76□□□□□ -1.17
APOEP02649 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
APOEP02649 RBMX2P2-201ENST00000257020 946 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms