Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 LETM1P2-201ENST00000597330 2178 ntBASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.93■□□□□ 0.78
USH1CQ9Y6N9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 Z82202.1-201ENST00000623446 1880 ntBASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 TREX1-205ENST00000625293 1783 ntBASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.92■□□□□ 0.78
USH1CQ9Y6N9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
USH1CQ9Y6N9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USH1CQ9Y6N9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.89■□□□□ 0.78
USH1CQ9Y6N9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.78
USH1CQ9Y6N9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
USH1CQ9Y6N9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms