Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
PCDHGA1Q9Y5H4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA1Q9Y5H4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
PCDHGA1Q9Y5H4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA1Q9Y5H4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA1Q9Y5H4 TERF1P1-201ENST00000311003 1181 ntBASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 KRT8P36-201ENST00000489121 1440 ntBASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA1Q9Y5H4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 NIFKP9-201ENST00000419265 221 ntBASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 AC073508.3-201ENST00000619697 1419 ntBASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA1Q9Y5H4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA1Q9Y5H4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 KRT18P57-201ENST00000443599 1254 ntBASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 AC010947.1-201ENST00000623454 693 ntBASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA1Q9Y5H4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 KRT16P1-201ENST00000399124 1418 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 HLA-G-202ENST00000376815 851 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 HLA-G-203ENST00000376818 1127 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 SLC25A3P1-201ENST00000443844 931 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 CR392000.1-201ENST00000624770 1228 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 AC027702.1-201ENST00000563810 1770 ntBASIC19.29■□□□□ 0.68
PCDHGA1Q9Y5H4 CYP2D8P-201ENST00000433633 1490 ntBASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms