Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.27■□□□□ 0.84
LHX3Q9UBR4 AC233263.1-201ENST00000578059 224 ntBASIC20.27■□□□□ 0.84
LHX3Q9UBR4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.27■□□□□ 0.84
LHX3Q9UBR4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LHX3Q9UBR4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LHX3Q9UBR4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.27■□□□□ 0.83
LHX3Q9UBR4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 POM121L13P-201ENST00000422362 380 ntBASIC20.26■□□□□ 0.83
LHX3Q9UBR4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 ITM2C-210ENST00000620962 501 ntBASIC20.26■□□□□ 0.83
LHX3Q9UBR4 AC073648.6-201ENST00000641589 218 ntBASIC20.26■□□□□ 0.83
LHX3Q9UBR4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LHX3Q9UBR4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 AC124283.5-201ENST00000624661 1809 ntBASIC20.25■□□□□ 0.83
LHX3Q9UBR4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 AC128676.1-201ENST00000454392 318 ntBASIC20.25■□□□□ 0.83
LHX3Q9UBR4 RPS2P52-201ENST00000469610 820 ntBASIC20.25■□□□□ 0.83
LHX3Q9UBR4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LHX3Q9UBR4 BX119927.1-201ENST00000636596 1552 ntBASIC20.25■□□□□ 0.83
LHX3Q9UBR4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 AC069544.1-201ENST00000609399 999 ntBASIC20.24■□□□□ 0.83
LHX3Q9UBR4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LHX3Q9UBR4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LHX3Q9UBR4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms