Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCAL1Q9NZC9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 AC019069.1-201ENST00000610008 1333 ntBASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 AC091799.1-201ENST00000422823 811 ntBASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCAL1Q9NZC9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 AC120498.10-201ENST00000621827 505 ntBASIC21.08■□□□□ 0.97
SMARCAL1Q9NZC9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCAL1Q9NZC9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCAL1Q9NZC9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCAL1Q9NZC9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.08■□□□□ 0.96
SMARCAL1Q9NZC9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCAL1Q9NZC9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 AP001160.3-201ENST00000601484 763 ntBASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 LINC02228-203ENST00000641970 1355 ntBASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCAL1Q9NZC9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 YBX1P1-201ENST00000445822 960 ntBASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCAL1Q9NZC9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.05■□□□□ 0.96
SMARCAL1Q9NZC9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms