Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VPS13AQ96RL7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
VPS13AQ96RL7 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS13AQ96RL7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20■□□□□ 0.79
VPS13AQ96RL7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS13AQ96RL7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20■□□□□ 0.79
VPS13AQ96RL7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20■□□□□ 0.79
VPS13AQ96RL7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS13AQ96RL7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20■□□□□ 0.79
VPS13AQ96RL7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20■□□□□ 0.79
VPS13AQ96RL7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.99■□□□□ 0.79
VPS13AQ96RL7 KSR1P1-201ENST00000446298 240 ntBASIC19.99■□□□□ 0.79
VPS13AQ96RL7 AL356652.1-201ENST00000615962 565 ntBASIC19.99■□□□□ 0.79
VPS13AQ96RL7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 AL031985.4-201ENST00000642138 673 ntBASIC19.99■□□□□ 0.79
VPS13AQ96RL7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS13AQ96RL7 RNF152P1-201ENST00000397754 604 ntBASIC19.99■□□□□ 0.79
VPS13AQ96RL7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 AC130371.2-201ENST00000619443 611 ntBASIC19.98■□□□□ 0.79
VPS13AQ96RL7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 TSPY5P-201ENST00000426936 936 ntBASIC19.98■□□□□ 0.79
VPS13AQ96RL7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS13AQ96RL7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 C2orf69P3-201ENST00000565542 1120 ntBASIC19.97■□□□□ 0.79
VPS13AQ96RL7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS13AQ96RL7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 AL671277.2-201ENST00000458060 996 ntBASIC19.96■□□□□ 0.79
VPS13AQ96RL7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 CR392000.1-201ENST00000624770 1228 ntBASIC19.96■□□□□ 0.79
VPS13AQ96RL7 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.96■□□□□ 0.79
VPS13AQ96RL7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS13AQ96RL7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms